Browse Element(s) Details


Os.43995.1.S1_at

Description gb:AK119387.1
DB_XREF= gi:37989010
TID=Os.43995.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to transposase (OJ1457_D07.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-C03, full insert sequence.
FL= gb:AK119387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3140010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31350OsAffx.28694.1.S1_at11/117+18571054..18573312hypothetical protein
LOC_Os07g31360OsAffx.7328.4.A1_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.7328.1.S1_s_at11/117+18574259..18574960hypothetical protein
LOC_Os07g31360OsAffx.12370.1.S1_at2/117+18574259..18574960hypothetical protein
LOC_Os07g31370OsAffx.16506.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31370Os.6032.1.S1_at11/117+18577148..18581074Ras-related protein Rab-6A, putative, expressed
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43995.1.S1_at--946--5371Chr07:18599419..18599443 (25 bp)
GAAGAACCTTCTGGTGGATCTAGCA
LOC_Os07g31400
Os.43995.1.S1_at--853--10011Chr07:18599399..18599423 (25 bp)
TAGCAGTATGCGTTCAGCCTCAGAA
LOC_Os07g31400
Os.43995.1.S1_at--261--5331Chr07:18599377..18599401 (25 bp)
GAAGTCCGCTTCAGTACTATGTGCC
LOC_Os07g31400
Os.43995.1.S1_at--668--3691Chr07:18599361..18599385 (25 bp)
CTATGTGCCGTTTTCTTAGCTTGAT
LOC_Os07g31400
Os.43995.1.S1_at--832--8831Chr07:18599340..18599364 (25 bp)
TGATAGCTTCAAGGGCTGCCAGATC
LOC_Os07g31400
Os.43995.1.S1_at--170--6411Chr07:18599319..18599343 (25 bp)
GATCTGAGGAGGCAACGTCTTATAT
LOC_Os07g31400
Os.43995.1.S1_at--372--7491Chr07:18599185..18599209 (25 bp)
GTGGGAAACCAACTTCCTGACCATA
LOC_Os07g31400
Os.43995.1.S1_at--55--2791Chr07:18599150..18599174 (25 bp)
AAGAGGAGTTCCACAGACCACAAAT
LOC_Os07g31400
Os.43995.1.S1_at--545--1951NONE
ACTGGCTACTATGGTCTGACATCAT
NONE
Os.43995.1.S1_at--900--6871Chr07:18598146..18598170 (25 bp)
GTATTCTGTAGATCCTGTCTTTCTC
LOC_Os07g31400
Os.43995.1.S1_at--398--351Chr07:18598090..18598114 (25 bp)
ATAACCAATCCTGATGTCTCTGTGC
LOC_Os07g31400
Target Sequence 
GAAGAACCTTCTGGTGGATCTAGCAGTATGCGTTCAGCCTCAGAAGTCCGCTTCAGTACTATGTGCCGTTTTCTTAGCTT
GATAGCTTCAAGGGCTGCCAGATCTGAGGAGGCAACGTCTTATATCGAAAGTCAATCAAGTGTTCTTCTGAAGCATCTAG
ATGATATTTTACAAACNGGTTATCCTGATATAGGAAATCATGTTGTTGCTTCAAGTAGTCAACCAATTTCTTTTGTGGGA
AACCAACTTCCTGACCATACATCACAAGCAAGAGGAGTTCCACAGACCACAAATGGNNTNANNNNGNNNNNNNNNNNCAA
NNNCANTNNNNACNNNACTGGCTACTATGGTCTGACATCATTGTTGGGGATTTCAACGGTTGATGAGTTTGTAAAATCCA
GCAGACAATTGGGATTGACCAGTGGGTTCTTTGTAGNGTTAGTCAAATGCAGGAGTATGGNTAGGCTATGTACAGTATTT
ATCTGGTACCATGTTGATGCAAGCAAGTGTATTCTGTAGATCCTGTCTTTCTCAAATNNTACTTTGGTAGCTGTTCTGCT
AAATATAACCAATCCTGATGTCTCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis