Browse Element(s) Details


Os.4453.1.S1_at

Description gb:AK102200.1
DB_XREF= gi:32987409
TID=Os.4453.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C26056(C11550),AU082131(C11550) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8; hypothetical protein (Z97343) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087E11, full insert sequence.
FL= gb:AK102200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0352011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03490NANA6+1340119..1340815expressed protein
LOC_Os06g03500OsAffx.10363.1.S1_at11/116+1346281..1350184NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g03510OsAffx.5378.3.A1_at11/116+1352865..1355327expressed protein
LOC_Os06g03510OsAffx.22016.1.S1_at1/116+1352865..1355327expressed protein
LOC_Os06g03520Os.4453.1.S1_at11/116+1360369..1361508expressed protein
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4453.1.S1_at--740--3991Chr06:1361092..1361116 (25 bp)
CGTGTCTGGCACTGTGTGATCGATC
LOC_Os06g03520
Os.4453.1.S1_at--122--5791Chr06:1361117..1361141 (25 bp)
GACGAGCGGTGGTTTGTCTCTGAAT
LOC_Os06g03520
Os.4453.1.S1_at--1156--7151Chr06:1361132..1361156 (25 bp)
GTCTCTGAATGTTTTTGCCATCTTC
LOC_Os06g03520
Os.4453.1.S1_at--760--1311Chr06:1361159..1361183 (25 bp)
AGATGGTTCATCGTTGTGCTCAGCT
LOC_Os06g03520
Os.4453.1.S1_at--989--3531Chr06:1361167..1361191 (25 bp)
CATCGTTGTGCTCAGCTGCTATTAG
LOC_Os06g03520
Os.4453.1.S1_at--651--4871Chr06:1361184..1361208 (25 bp)
GCTATTAGCCCATGTCAAGAATCAA
LOC_Os06g03520
Os.4453.1.S1_at--270--6231Chr06:1361230..1361254 (25 bp)
GAGGCCATGCGAACACTAGTCTATC
LOC_Os06g03520
Os.4453.1.S1_at--736--6571Chr06:1361342..1361366 (25 bp)
GATTCCAAATCGAGACATGTAACAT
LOC_Os06g03520
Os.4453.1.S1_at--243--3571Chr06:1361364..1361388 (25 bp)
CATAAGTGTTCATGCTTTCTCCATC
LOC_Os06g03520
Os.4453.1.S1_at--665--10291Chr06:1361379..1361403 (25 bp)
TTTCTCCATCATGCTGGAGCCTGTA
LOC_Os06g03520
Os.4453.1.S1_at--951--1951Chr06:1361444..1361468 (25 bp)
ACTGGTACTGGTTTGGTTTGAGCTT
LOC_Os06g03520
Target Sequence 
CGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCG
TTGTGCTCAGCTGCTATTAGCCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCT
ATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGAGAGAAAGGTGTTGAAATTAAGAGAAATCAATCGAGATCAT
GATGATATTAGATTCCAAATCGAGACATGTAACATAAGTGTTCATGCTTTCTCCATCATGCTGGAGCCTGTACTAAGTTG
AAGGATCGATCATGCATGTAGAATTAACTAGTACTGGTACTGGTTTGGTTTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis