Browse Element(s) Details


Os.4469.1.S2_at

Description gb:AK119438.1
DB_XREF= gi:37989061
TID=Os.4469.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsFEN-1a mRNA for FEN-1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-B04, full insert sequence.
FL= gb:AK103819.1 gb:AB021666.2 gb:AK060623.1 gb:AK119438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4627011/11XPG I-region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4469.1.S2_at--337--4291Chr05:26745861..26745885 (25 bp)
CCTCAGATGTGGGTCGTCCCGGAGA
LOC_Os05g46270
Os.4469.1.S2_at--310--6011Chr05:26745840..26745864 (25 bp)
GAGAGCCCTTTCCTGGAGATGCCCA
LOC_Os05g46270
Os.4469.1.S2_at--52--3271Chr05:26745702..26745726 (25 bp)
CAACACTATCGCCAAGACGACGACG
LOC_Os05g46270
Os.4469.1.S2_at--127--8931Chr05:26745634..26745658 (25 bp)
TGAGCCGTCAAGAACACAGCATTGT
LOC_Os05g46270
Os.4469.1.S2_at--389--3611Chr05:26745615..26745639 (25 bp)
CATTGTGACAATCTGGAGGAGCTTG
LOC_Os05g46270
Os.4469.1.S2_at--879--5911Chr05:26745597..26745621 (25 bp)
GAGCTTGTGGTCATTGGTTTCCAGA
LOC_Os05g46270
Os.4469.1.S2_at--167--3451Chr05:26745558..26745582 (25 bp)
CAGGTTCAGTTTGTGAGGTACGTCA
LOC_Os05g46270
Os.4469.1.S2_at--615--6191Chr05:26745531..26745555 (25 bp)
GAGGAAGCATCCATGGCGTTGCGCC
LOC_Os05g46270
Os.4469.1.S2_at--864--8691Chr05:26745502..26745526 (25 bp)
TGTGCTGATCAAGCATGGACACGTC
LOC_Os05g46270
Os.4469.1.S2_at--76--2171Chr05:26745484..26745508 (25 bp)
ACACGTCGAGGATAGAGGCCCAGGT
LOC_Os05g46270
Os.4469.1.S2_at--522--7871Chr05:26745382..26745406 (25 bp)
GGTTTGCTGTTCGATGGACCAAGTT
LOC_Os05g46270
Target Sequence 
CCTCAGATGTGGGTCGTCCCGGAGAGCCCTTTCCTGGAGATGCCCAGCCTGAGGAGGCTGCTGGTCGCCGACGTGCCGCC
GCGCTGGGACGCGACGTGGATCCGCGCCGTCGTCGAGGCGGCGGCGCCGTCGCTTGAGCGCCTCCACGTCCACTTCTCCC
AACACTATCGCCAAGACGACGACGACCCGGCGGCGGATCGTCGGAGATTGGAGATAGTGTGGGAGAATGAGCCGTCAAGA
ACACAGCATTGTGACAATCTGGAGGAGCTTGTGGTCATTGGTTTCCAGAGCAAGAAAGAGAGGCAGGTTCAGTTTGTGAG
GTACGTCATGGAGGAAGCATCCATGGCGTTGCGCCGTGTTGTGCTGATCAAGCATGGACACGTCGAGGATAGAGGCCCAG
GTGAATGGGAGATGGTGAGCCAGAAATGTACTTGGAGCGATGAGGAGAAGCTCGCCGTGAAGGAGCAGATCATGGAGGGG
GTTTGCTGTTCGATGGACCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4469.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis