Browse Element(s) Details

Os.44696.1.S1_at

Description

gb:NM_185778.1
DB_XREF= gi:34898641
GEN=P0676F10.9
TID=Os.44696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44696 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative signal peptidase subunit (P0676F10.9), mRNA.
PROD=putative signal peptidase subunit
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16260	10/11	Microsomal signal peptidase 21 kDa subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16220	NA	NA	6	+	9233087..9236324	transposon protein, putative, unclassified
LOC_Os06g16230	NA	NA	6	+	9236954..9243111	transposon protein, putative, unclassified
LOC_Os06g16240	Os.37647.2.S1_at	11/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.2.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16240	OsAffx.15454.1.S1_x_at	2/11	6	+	9245723..9247373	expressed protein
LOC_Os06g16250	Os.31925.1.S1_at	10/11	6	+	9252725..9254522	expressed protein
LOC_Os06g16260	Os.10990.1.S1_at	11/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16260	Os.44696.1.S1_at	10/11	6	+	9255962..9261241	Microsomal signal peptidase 21 kDa subunit, putative, expressed
LOC_Os06g16270	Os.44694.1.A1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_at	11/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16270	Os.1120.1.S1_s_at	10/11	6	+	9262602..9264448	heat shock factor binding protein 2, putative, expressed
LOC_Os06g16280	Os.23579.1.A1_at	7/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.820.1.S1_s_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16280	Os.19330.1.S1_x_at	1/11	6	+	9266069..9279990	expressed protein
LOC_Os06g16290	Os.28409.2.S1_at	11/11	6	+	9282151..9284248	H/ACA ribonucleoprotein complex subunit 2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44696.1.S1_at--256--355	1	Chr06:9259850..9259979 (25 bp)	CATCAGCTTAGGAGAGTTTCTTTGG	LOC_Os06g16260
Os.44696.1.S1_at--722--607	1	Chr06:9259837..9259861 (25 bp)	GAGTTTCTTTGGGAGTGGTCTATTC	LOC_Os06g16260
Os.44696.1.S1_at--1043--763	1	Chr06:9259827..9259851 (25 bp)	GGGAGTGGTCTATTCTTAGTTCTGT	LOC_Os06g16260
Os.44696.1.S1_at--626--715	1	Chr06:9259820..9259844 (25 bp)	GTCTATTCTTAGTTCTGTTGGGTTT	LOC_Os06g16260
Os.44696.1.S1_at--112--123	1	Chr06:9259810..9259834 (25 bp)	AGTTCTGTTGGGTTTGATTTCGCTG	LOC_Os06g16260
Os.44696.1.S1_at--689--385	1	Chr06:9259807..9259830 (24 bp)	CTGTTGGGTTTGATTTCGCTGGTAT	LOC_Os06g16260
Os.44696.1.S1_at--526--1079	1	NONE	TTGATTTCGCTGGTATGATTGTTAC	NONE
Os.44696.1.S1_at--380--57	1	Chr06:9257334..9257358 (25 bp)	ATCCTCACAAAAGGTATCCATCATT	LOC_Os06g16260
Os.44696.1.S1_at--504--57	1	Chr06:9257319..9257343 (25 bp)	ATCCATCATTTTCTATTTGAACACC	LOC_Os06g16260
Os.44696.1.S1_at--1084--549	1	Chr06:9257301..9257325 (25 bp)	GAACACCATAAGTTTCTCACCAGTG	LOC_Os06g16260
Os.44696.1.S1_at--1105--171	1	Chr06:9257183..9257307 (25 bp)	ACCAGTGGTTATAGTGGTGATAACA	LOC_Os06g16260

Target Sequence

CATCAGCTTAGGAGAGTTTCTTTGGGAGTGGTCTATTCTTAGTTCTGTTGGGTTTGATTTCGCTGGTATGATTGTTACCT
CTGCATTGATCATATGGAAGGGTTTAATAGTTGTAACAGGTAGTGAATCTCCAGTGGTGGTGGTTCTTTCTGGTAGCATG
GAACCTGGATTTAAAAGAGGTGACATCCTGTTTTTGCACATGAGCAAAGACCCTATCCGCACTGGAGAAATAGTTGTTTT
TAATGTTGATGGCCGTGAAATTCCAATTGTTCACCGTGTGATCAAGGTTCATGAACGCCAGGAGAGTGCAGAAGTTGACA
TCCTCACAAAAGGTATCCATCATTTTCTATTTGAACACCATAAGTTTCTCACCAGTGGTTATAGTGGTGATAACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis