Browse Element(s) Details


Os.45875.1.S1_x_at

Description gb:AK120703.1
DB_XREF= gi:37990326
TID=Os.45875.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gamma-glutamyltransferase (P0009G03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170P19, full insert sequence.
FL= gb:AK120703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g058103/11gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g058201/11Gamma-glutamyltranspeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003840molecular_functiongamma-glutamyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45875.1.S1_x_at--823--9192Chr01:2787134..2787158 (25 bp)
TGCCAGTTCATCGTGCAGGACTTGC
LOC_Os01g05820
Os.45875.1.S1_x_at--97--10551Chr01:2777998..2778022 (25 bp)
TTCATCGTGCAGGACTTGCTGGCGC
LOC_Os01g05810
Os.45875.1.S1_x_at--1153--4071Chr01:2778096..2778120 (25 bp)
CGACCCGAGGAAAGGCGGCAGACCT
LOC_Os01g05810
Os.45875.1.S1_x_at--209--1391Chr01:2778115..2778139 (25 bp)
AGACCTGCCGGAATGTGATGGCGCA
NONE
Os.45875.1.S1_x_at--378--3491Chr01:2778142..2778166 (25 bp)
CATGGCGCGCCACGGCATCGATTAG
NONE
Os.45875.1.S1_x_at--172--1671Chr01:2778181..2778205 (25 bp)
AGCCGAAATTCTTACACGATTCATG
NONE
Os.45875.1.S1_x_at--697--2171Chr01:2778194..2778218 (25 bp)
ACACGATTCATGTGAAAGCTGAACA
NONE
Os.45875.1.S1_x_at--729--9471Chr01:2778234..2778258 (25 bp)
TCTTCAAAATTTGTACAGCAGTGGA
NONE
Os.45875.1.S1_x_at--704--10771Chr01:2778244..2778268 (25 bp)
TTGTACAGCAGTGGAACGGCCGGCT
NONE
Os.45875.1.S1_x_at--685--2571Chr01:2778258..2778282 (25 bp)
AACGGCCGGCTGTGGCGCTCGAGCA
NONE
Os.45875.1.S1_x_at--651--5131Chr01:2778474..2778498 (25 bp)
GCAAAATTTATAATGACGTGATCAA
NONE
Target Sequence 
TGCCAGTTCATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCGGCAGCACGGCGGCGGGAACGTCTT
CCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACCTGCCGGAATGTGATGGCGCATGCATGGCGCGC
CACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAA
ATTCTTCAAAATTTGTACAGCAGTGGAACGGCCGGCTGTGGCGCTCGAGCACGGGGCAGCCATGGGTGGTTTGNTGGAGN
AGATGACTGGAGGTNCNTGNGAGGATGAACGGAGAAGATTGGGTATTTTGGTCCCAAAAATTGANAAATACAGCCAAGGG
ATATTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCAAATTGTAAAA
TTGCAAAATTTATAATGACGTGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45875.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis