Browse Element(s) Details


Os.45875.2.S1_at

Description gb:NM_184390.1
DB_XREF= gi:34895869
GEN=P0009G03.15
TID=Os.45875.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45875 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative gamma-glutamyltransferase (P0009G03.15), mRNA.
PROD=putative gamma-glutamyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0581011/11gamma-glutamyltranspeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003840molecular_functiongamma-glutamyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45875.2.S1_at--493--2311Chr01:2777198..2777258 (25 bp)
AAAGGCAAGCATATACTCGCCGATG
LOC_Os01g05810
Os.45875.2.S1_at--597--8231Chr01:2777201..2777261 (25 bp)
GGCAAGCATATACTCGCCGATGCTG
LOC_Os01g05810
Os.45875.2.S1_at--974--3231Chr01:2777203..2777263 (25 bp)
CAAGCATATACTCGCCGATGCTGAC
LOC_Os01g05810
Os.45875.2.S1_at--1013--231Chr01:2777208..2777268 (25 bp)
ATATACTCGCCGATGCTGACCACTG
LOC_Os01g05810
Os.45875.2.S1_at--141--631Chr01:2777256..2777280 (25 bp)
ATGCTGACCACTGCAGTGCTATCTG
LOC_Os01g05810
Os.45875.2.S1_at--94--8931Chr01:2777260..2777284 (25 bp)
TGACCACTGCAGTGCTATCTGTGCA
LOC_Os01g05810
Os.45875.2.S1_at--771--1711Chr01:2777262..2777286 (25 bp)
ACCACTGCAGTGCTATCTGTGCAGA
LOC_Os01g05810
Os.45875.2.S1_at--792--3331Chr01:2777264..2777288 (25 bp)
CACTGCAGTGCTATCTGTGCAGAAC
LOC_Os01g05810
Os.45875.2.S1_at--247--5031Chr01:2777268..2777292 (25 bp)
GCAGTGCTATCTGTGCAGAACGGAC
LOC_Os01g05810
Os.45875.2.S1_at--154--7331Chr01:2777271..2777295 (25 bp)
GTGCTATCTGTGCAGAACGGACAGC
LOC_Os01g05810
Os.45875.2.S1_at--331--3691Chr01:2777274..2777298 (25 bp)
CTATCTGTGCAGAACGGACAGCTCG
LOC_Os01g05810
Target Sequence 
AAAGGCAAGCATATACTCGCCGATGCTGACCACTGCAGTGCTATCTGTGCAGAACGGACAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45875.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis