Browse Element(s) Details


Os.45896.1.S1_x_at

Description gb:NM_193284.1
DB_XREF= gi:34913651
GEN=OSJNBa0047D12.10
TID=Os.45896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45896 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative small GTP-binding protein (OSJNBa0047D12.10), mRNA.
PROD=putative small GTP-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3585011/11RAC-like GTP binding protein ARAC7, putative
LOC_Os05g438205/11RAC-like GTP binding protein ARAC7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35800OsAffx.29731.1.S1_at1/111+20154238..20156856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35810NANA1+20159258..20159989hypothetical protein
LOC_Os01g35820NANA1+20162293..20170128retrotransposon protein, putative, unclassified
LOC_Os01g35830Os.9577.1.S1_at11/111+20172497..20175199expressed protein
LOC_Os01g35830OsAffx.3177.1.S1_at2/111+20172497..20175199expressed protein
LOC_Os01g35840OsAffx.23522.1.S1_x_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35840OsAffx.23522.1.S1_at11/111+20177334..20178313hypothetical protein
LOC_Os01g35850Os.45896.1.S1_x_at11/111+20179283..20181578RAC-like GTP binding protein ARAC7, putative
LOC_Os01g35860OsAffx.27342.1.S1_at4/111+20182060..20185369transposon protein, putative, Mutator sub-class
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45896.1.S1_x_at--474--6712Chr05:25392105..25392129 (25 bp)
GTTCGACAACTTCAGTGCTAATGTT
LOC_Os05g43820
Os.45896.1.S1_x_at--169--3252Chr05:25392150..25392174 (25 bp)
CAACTTGGGATTATGGGACACTGCT
LOC_Os05g43820
Os.45896.1.S1_x_at--410--5091Chr01:20179891..20179915 (25 bp)
GCACCGAATGCTCCAATTGTTCTTG
LOC_Os01g35850
Os.45896.1.S1_x_at--654--8792Chr05:25392689..25392827 (25 bp)
TGTTCTTGTTGGGACGATCTACGTG
LOC_Os05g43820
Os.45896.1.S1_x_at--251--10392Chr05:25392694..25392832 (25 bp)
TTGTTGGGACGATCTACGTGACCAC
LOC_Os05g43820
Os.45896.1.S1_x_at--184--7351Chr01:20179738..20179762 (25 bp)
GTGACCACAAATCTTACCTTGCGGA
LOC_Os01g35850
Os.45896.1.S1_x_at--544--9071Chr01:20179704..20179728 (25 bp)
TGCTTCCTCAATTACGACTGCACAG
LOC_Os01g35850
Os.45896.1.S1_x_at--393--5731Chr01:20179388..20179713 (25 bp)
GACTGCACAGAACATCAAGGCCCTG
LOC_Os01g35850
Os.45896.1.S1_x_at--765--9731Chr01:20179374..20179398 (25 bp)
TCAAGGCCCTGTTTGATACTGCCAT
LOC_Os01g35850
Os.45896.1.S1_x_at--64--6472Chr05:25393208..25393231 (24 bp)
GATACTGCCATCAAGGTGGTCCTTG
LOC_Os05g43820
Os.45896.1.S1_x_at--971--8591Chr01:20179344..20179368 (25 bp)
TGGTCCTTGAGCCTCCTCGGAGAAG
LOC_Os01g35850
Target Sequence 
GTTCGACAACTTCAGTGCTAATGTTTCAGTGGATGGGGACATCGTCAACTTGGGATTATGGGACACTGCTGGGGATGCCG
GAGCTTCGCCGGTTCGCACCGAATGCTCCAATTGTTCTTGTTGGGACGATCTACGTGACCACAAATCTTACCTTGCGGAC
CATCCTGCTGCTTCCTCAATTACGACTGCACAGAACATCAAGGCCCTGTTTGATACTGCCATCAAGGTGGTCCTTGAGCC
TCCTCGGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45896.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis