Browse Element(s) Details


Os.45898.1.S1_at

Description gb:NM_190628.1
DB_XREF= gi:34908339
GEN=P0529H11.23
TID=Os.45898.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.23 (P0529H11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0529H11.23 (P0529H11.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6324011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45898.1.S1_at--491--7671Chr01:36981491..36981515 (25 bp)
GGGATTCAGCAGATACCACTTCTGC
LOC_Os01g63240
Os.45898.1.S1_at--237--6571Chr01:36981489..36981513 (25 bp)
GATTCAGCAGATACCACTTCTGCAT
LOC_Os01g63240
Os.45898.1.S1_at--1034--1511Chr01:36981484..36981508 (25 bp)
AGCAGATACCACTTCTGCATCACGC
LOC_Os01g63240
Os.45898.1.S1_at--910--1571Chr01:36981282..36981306 (25 bp)
AGCTAAGCTCAGTTATCTTCTTCAG
LOC_Os01g63240
Os.45898.1.S1_at--1022--9771Chr01:36981279..36981303 (25 bp)
TAAGCTCAGTTATCTTCTTCAGTTC
LOC_Os01g63240
Os.45898.1.S1_at--587--1571Chr01:36981277..36981301 (25 bp)
AGCTCAGTTATCTTCTTCAGTTCGC
LOC_Os01g63240
Os.45898.1.S1_at--280--9651Chr01:36981274..36981298 (25 bp)
TCAGTTATCTTCTTCAGTTCGCCCG
LOC_Os01g63240
Os.45898.1.S1_at--474--1211Chr01:36981272..36981296 (25 bp)
AGTTATCTTCTTCAGTTCGCCCGCC
LOC_Os01g63240
Os.45898.1.S1_at--24--9531Chr01:36981267..36981291 (25 bp)
TCTTCTTCAGTTCGCCCGCCGTAGA
LOC_Os01g63240
Os.45898.1.S1_at--1009--6371Chr01:36981244..36981268 (25 bp)
GATCGCCTCCCCTGCGGGCTGTGGT
LOC_Os01g63240
Os.45898.1.S1_at--877--3891Chr01:36981226..36981250 (25 bp)
CTGTGGTTGCGCGGCTTCGTTTGCA
LOC_Os01g63240
Target Sequence 
GGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCC
CGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTG
CTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTNAGCTAAGCTCAGTTATCTTCTTCAGTTCGCC
CGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis