Browse Element(s) Details


Os.45990.2.S1_x_at

Description gb:NM_190941.1
DB_XREF= gi:34908965
GEN=P0003D09.20
TID=Os.45990.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003D09.20 (P0003D09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0003D09.20 (P0003D09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5877011/11hypothetical protein
LOC_Os01g107508/11hypothetical protein
LOC_Os02g102108/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein
LOC_Os01g58760OsAffx.23844.1.S1_s_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58760OsAffx.23844.1.S1_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58770Os.45990.2.S1_x_at11/111+34294745..34295113hypothetical protein
LOC_Os01g58780Os.37704.1.S1_at11/111+34295592..34297653Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.3.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820OsAffx.8469.1.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.45173.3.S1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.2.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58830OsAffx.31753.4.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.1.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.4.S1_at1/111+34319117..34321036hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45990.2.S1_x_at--713--7651Chr01:34294957..34294981 (25 bp)
GGGATGTTATCCTACGTCGCCGCGG
LOC_Os01g58770
Os.45990.2.S1_x_at--1154--711Chr01:34294954..34294978 (25 bp)
ATGTTATCCTACGTCGCCGCGGATG
LOC_Os01g58770
Os.45990.2.S1_x_at--496--6791Chr01:34294952..34294976 (25 bp)
GTTATCCTACGTCGCCGCGGATGGC
LOC_Os01g58770
Os.45990.2.S1_x_at--870--454Chr11:16258760..16258784 (25 bp)
ATCTCCTCCACGCAAGTCAACTAAA
NONE
Os.45990.2.S1_x_at--975--3794Chr11:16258762..16258786 (25 bp)
CTCCTCCACGCAAGTCAACTAAATG
NONE
Os.45990.2.S1_x_at--662--5174Chr11:16258771..16258795 (25 bp)
GCAAGTCAACTAAATGGTCACAGGG
NONE
Os.45990.2.S1_x_at--221--7615Chr11:16258794..16258818 (25 bp)
GGGCAATTTTGTCACACCACGGTGG
NONE
Os.45990.2.S1_x_at--1040--5195Chr11:16258796..16258820 (25 bp)
GCAATTTTGTCACACCACGGTGGAA
NONE
Os.45990.2.S1_x_at--186--10415Chr11:16258800..16258824 (25 bp)
TTTTGTCACACCACGGTGGAAATCA
NONE
Os.45990.2.S1_x_at--192--2175Chr11:16258807..16258831 (25 bp)
ACACCACGGTGGAAATCATTTGCAA
NONE
Os.45990.2.S1_x_at--962--3375Chr11:16258808..16258832 (25 bp)
CACCACGGTGGAAATCATTTGCAAA
NONE
Target Sequence 
GGGATGTTATCCTACGTCGCCGCGGATGGCGTCGCCGGCGCCACCGTCGTCCCAGCCACGCCGCTGAGCCGAGCAGCCTT
CTCCACCCACGCCGGCATCATCTCCGTCCCCAGCCGCGCCGGCGCCGGGGATCCATCTCCTCCACGCAAGTCAACTAAAT
GGTCACAGGGGCAATTTTGTCACACCACGGTGGAAATCATTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45990.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis