Browse Element(s) Details


Os.46048.1.S1_x_at

Description gb:CB642477
DB_XREF= gi:29637468
DB_XREF=OSJNEb02K21.f
CLONE=OSJNEb02K21
TID=Os.46048.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.11 (P0434B04.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0550011/11zinc finger in N-recognin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46048.1.S1_x_at--1115--10331Chr01:2603627..2603651 (25 bp)
TTTAGATCATATGTTTGGGCCCAAC
LOC_Os01g05500
Os.46048.1.S1_x_at--481--10631Chr01:2603690..2603714 (25 bp)
TTCGAACCTGTCAATTGGCTCCAAG
LOC_Os01g05500
Os.46048.1.S1_x_at--943--551Chr01:2603782..2603806 (25 bp)
ATCCGTCCAAATCTTCTGGTTCAGT
LOC_Os01g05500
Os.46048.1.S1_x_at--847--7251Chr01:2603824..2603848 (25 bp)
GTCCTGTTGATTGTGATGGCATCCA
LOC_Os01g05500
Os.46048.1.S1_x_at--379--10151Chr01:2603851..2603875 (25 bp)
TATCCTCTTGTGGACATGCTGTACA
LOC_Os01g05500
Os.46048.1.S1_x_at--674--7031Chr01:2603871..2603895 (25 bp)
GTACACCAGGAATGCCATGATCGAT
LOC_Os01g05500
Os.46048.1.S1_x_at--142--1351Chr01:2604362..2604386 (25 bp)
AGAGTTGCTGTGTCCAGTCTGTCGC
LOC_Os01g05500
Os.46048.1.S1_x_at--255--5131Chr01:2604393..2604417 (25 bp)
GCAAATTCTATTCTTCCAGCATCAC
LOC_Os01g05500
Os.46048.1.S1_x_at--37--1551Chr01:2604410..2604434 (25 bp)
AGCATCACCTGATTTCTCTAGTAAA
LOC_Os01g05500
Os.46048.1.S1_x_at--942--6351Chr01:2604449..2604473 (25 bp)
GATGCCATCTGTTCAGATACCGTCT
LOC_Os01g05500
Os.46048.1.S1_x_at--903--2831Chr01:2604506..2604530 (25 bp)
AAGTAACTTACAGTTCCCTCATGCA
LOC_Os01g05500
Target Sequence 
TTTAGATCATATGTTTGGGCCCAACAATGTAGAAACTAAAGATGATGAACAAACAGTGAATACTTCGAACCTGTCAATTG
GCTCCAAGAAAAACAGAAGCCCCAGAAGTTCTGTGCTGGGAACATATGTTAATTGTCTTTCAACAAAACACCTTCATCCG
TCCAAATCTTCTGGTTCAGTTACAAGGAACAGATTTGGTCCTGTTGATTGTGATGGCATCCACATATCCTCTTGTGGACA
TGCTGTACACCAGGAATGCCATGATCGATATTTATTCTCCTTGAAACAAAGATATGTCAGGAGACTTGGTTTTGAAACTG
GTCATATTGTTGATCCGGATCTGGGAGAGTTGCTGTGTCCAGTCTGTCGCAGATTTGCAAATTCTATTCTTCCAGCATCA
CCTGATTTCTCTAGTAAATCTTTGAGGAAGACGATGCCATCTGTTCAGATACCGTCTGAAGCTCCTCCTGCGTCATCATG
GACGACGACAAGTAACTTACAGTTCCCTCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46048.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis