Browse Element(s) Details


Os.4614.2.S1_x_at

Description gb:AK060972.1
DB_XREF= gi:32970990
TID=Os.4614.2
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D12, full insert sequence.
FL= gb:AK060972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4026011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40240Os.11890.1.S1_at11/112+24344861..24348617Leucine Rich Repeat family protein, expressed
LOC_Os02g40250Os.10263.1.S1_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.10222.1.S1_x_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.22442.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.6693.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.45902.1.A1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.51841.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.11828.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40260Os.4614.1.S1_a_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40260Os.4614.2.S1_x_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40270OsAffx.12426.1.S1_at11/112+24375022..24376804hypothetical protein
LOC_Os02g40280OsAffx.12427.1.S1_at11/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.2925.1.S1_at10/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.10566.1.S1_at1/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40300NANA2+24391662..24392900retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0007165biological_processsignal transduction
GO:0009826biological_processunidimensional cell growth
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4614.2.S1_x_at--1144--4151Chr02:24367742..24367766 (25 bp)
CGCCATCAATCTTGCATTTGCAAGA
LOC_Os02g40260
Os.4614.2.S1_x_at--1075--9051Chr02:24367754..24367778 (25 bp)
TGCATTTGCAAGACTCCCTCCTCGA
LOC_Os02g40260
Os.4614.2.S1_x_at--687--7311Chr02:24367780..24367804 (25 bp)
GTGCTCCTCCTGAACAACCAGCTCT
LOC_Os02g40260
Os.4614.2.S1_x_at--195--3731Chr02:24367947..24368186 (25 bp)
CTACGGAGAGATCCCCGAGCGCCAC
LOC_Os02g40260
Os.4614.2.S1_x_at--1121--4231Chr02:24368230..24368254 (25 bp)
CCGGCGGACAGGGTGGTCAAGGACT
LOC_Os02g40260
Os.4614.2.S1_x_at--221--3791Chr02:24368363..24368387 (25 bp)
CTCGGGGTGGTATTTGCTCTTGTAT
LOC_Os02g40260
Os.4614.2.S1_x_at--898--6871Chr02:24368384..24368408 (25 bp)
GTATTCTTGTGTTCGTTTGTTGTGC
LOC_Os02g40260
Os.4614.2.S1_x_at--184--131Chr02:24368386..24368410 (25 bp)
ATTCTTGTGTTCGTTTGTTGTGCTC
LOC_Os02g40260
Os.4614.2.S1_x_at--423--6711Chr02:24368394..24368418 (25 bp)
GTTCGTTTGTTGTGCTCGTGAGTCG
LOC_Os02g40260
Os.4614.2.S1_x_at--593--1751Chr02:24368478..24368502 (25 bp)
ACCTCCTGTACTCTTGTGTACTGTA
LOC_Os02g40260
Os.4614.2.S1_x_at--447--7011Chr02:24368485..24368509 (25 bp)
GTACTCTTGTGTACTGTACTATGTG
LOC_Os02g40260
Target Sequence 
CGCCATCAATCTTGCATTTGCAAGACTCCCTCCTCGANGGTGCTCCTCCTGAACAACCAGCTCTCCGGNTGCCTCCCCCA
CGAGCTCGGCATGNTCACCAAGGCCGCAGTGTTCGACGNCGGCATGAACCAGNTNACCGGGCCGATCCCCTCCTCTTTCT
CATGCCTCACCAGCGTCGAGCAGCTCAACCTGGGCGGCAACCGCCTCTACGGAGAGATCCCCGAGCGCCACCCACGTGGC
GTGCCCCGCCGGAGCTGCCAACGCTGCGGCGGCGCCGGCGGACAGGGTGGTCAAGGACTACTNCCAGCTACGTGACGTAC
GCCACCCTGCACGAGTGAGCCCGGCGCCACGGCACGGGNGCACGACGTGCGTGCATGCATGCAGTAGGGGACAGCTAGAA
GCTAGCGTCTCGGGGTGGTATTTGCTCTTGTATTCTTGTGTTCGTTTGTTGTGCTCGTGAGTCGTCATTGTGGTTTGTTT
TCTCTGCACGTGTGGCTAGCTATGGCTGTCACGTCTAGATCTCACCTCCTGTACTCTTGTGTACTGTACTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4614.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis