Browse Element(s) Details

Os.46208.1.S1_x_at

Description

gb:CB635070
DB_XREF= gi:29630061
DB_XREF=OSIIEb15A23.f
CLONE=OSIIEb15A23
TID=Os.46208.1
CNT=16
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ATPase a subunit (OSJNBa0034L04.41), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38292	11/11	Chloroplast ATP synthase a chain precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38210	OsAffx.26050.13.S1_x_at	5/11	10	+	20135104..20135529	NAD, putative
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370	OsAffx.22848.4.S1_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370	OsAffx.22848.4.S1_x_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46208.1.S1_x_at--773--25	2	Chr10:10507184..10507208 (25 bp)	ATATCCTTTATGTCTATAAGTTCAG	NONE
Os.46208.1.S1_x_at--578--715	2	Chr10:10507195..10507219 (25 bp)	GTCTATAAGTTCAGTCATCTTTTGT	NONE
Os.46208.1.S1_x_at--599--711	2	Chr10:10507208..10507232 (25 bp)	GTCATCTTTTGTATGGGTTTCCACT	NONE
Os.46208.1.S1_x_at--286--873	2	Chr10:10507217..10507241 (25 bp)	TGTATGGGTTTCCACTTTAAGGAAT	NONE
Os.46208.1.S1_x_at--99--507	2	Chr10:10507385..10507409 (25 bp)	GCAGCATATTGTTATCAATTGGATA	NONE
Os.46208.1.S1_x_at--270--609	2	Chr10:10507593..10507616 (24 bp)	GAGTACACAAACCTCTAATGATTAG	NONE
Os.46208.1.S1_x_at--555--231	2	Chr10:10507616..10507639 (24 bp)	AAAGGAGATCTCGAAGCAGTTCGGA	NONE
Os.46208.1.S1_x_at--375--411	2	Chr10:10507626..10507650 (25 bp)	CGAAGCAGTTCGGAGAATTCAGATT	NONE
Os.46208.1.S1_x_at--54--807	2	Chr10:10507637..10507661 (25 bp)	GGAGAATTCAGATTATCGTTTCAAT	NONE
Os.46208.1.S1_x_at--148--869	2	Chr10:10507663..10507687 (25 bp)	TGTACTTTTTAGTTACTTCTGTCCA	NONE
Os.46208.1.S1_x_at--649--677	2	Chr10:10507674..10507698 (25 bp)	GTTACTTCTGTCCAATAGAGCTTAG	NONE

Target Sequence

ATATCCTTTATGTCTATAAGTTCAGTCATCTTTTGTATGGGTTTCCACTTTAAGGAATTTTTTTTGAATCCGATTCAATA
GAAAATGAGAAAATACACAAANAAAATAGAAGAAACAAATTGATATGGGATATTATATATTCCCAAGTTAGATTCATTAT
CTAATCCGATATATGGAATCGGATTCCATATCCAATTCGATGCAGCATATTGTTATCAATTGGATATCTTGATTNTAATT
CCTATTGGATCTGGATTAGGTCGATTTCCATAGGGGTTCTTCCTCTATTTCACCTTTTATTATGAATTAGATGATAGGGG
AAAAAATAGAAACTCAAGGATATCGAAGAGGAAAGAAAGAAGGATGGAATGAAAGATCAGTTGGTTGGAAAGAAAGAGAA
ATAGAATAATGAGTACACAAACCTCTAATGATTAGAAACTAAAAAGGAGATCTCGAAGCAGTTCGGAGAATTCAGATTAT
CGTTTCAATTTGTACTTTTTAGTTACTTCTGTCCAATAGAGCTTAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis