Browse Element(s) Details


Os.46314.2.S1_x_at

Description gb:NM_193700.1
DB_XREF= gi:34914483
GEN=B1080D07.23
TID=Os.46314.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1080D07.23 (B1080D07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1080D07.23 (B1080D07.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g330607/11transposon protein, putative, unclassified
LOC_Os04g022207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g035307/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g099706/11retrotransposon protein, putative, unclassified
LOC_Os12g085646/11expressed protein
LOC_Os04g032806/11transposon protein, putative, unclassified
LOC_Os11g185106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g053805/11retrotransposon protein, putative, unclassified
LOC_Os10g064605/11retrotransposon protein, putative, unclassified
LOC_Os04g041605/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g222105/11transposon protein, putative, unclassified
LOC_Os12g110005/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g224905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g063005/11transposon protein, putative, unclassified
LOC_Os02g260145/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os11g122005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g064405/11transposon protein, putative, unclassified
LOC_Os03g357885/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g225405/11transposon protein, putative, unclassified
LOC_Os11g260404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g292804/11retrotransposon protein, putative, unclassified
LOC_Os03g230604/11transposon protein, putative, unclassified
LOC_Os12g172604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g190104/11transposon protein, putative, unclassified
LOC_Os11g168404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g062404/11transposon protein, putative, unclassified
LOC_Os05g177704/11transposon protein, putative, unclassified
LOC_Os06g256703/11hypothetical protein
LOC_Os01g280003/11retrotransposon protein, putative, unclassified
LOC_Os08g189903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g145403/11retrotransposon protein, putative, unclassified
LOC_Os09g131703/11transposon protein, putative, unclassified
LOC_Os09g097602/11retrotransposon protein, putative, unclassified
LOC_Os09g035602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g120902/11transposon protein, putative, unclassified
LOC_Os04g112602/11transposon protein, putative, unclassified
LOC_Os01g310202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g182802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g398702/11retrotransposon protein, putative, unclassified
LOC_Os06g314202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g264302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g266002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g170702/11retrotransposon protein, putative, unclassified
LOC_Os01g361802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g240602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g331502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g170002/11transposon protein, putative, unclassified
LOC_Os01g290402/11retrotransposon protein, putative, unclassified
LOC_Os02g207402/11transposon protein, putative, unclassified
LOC_Os04g172502/11retrotransposon protein, putative, unclassified
LOC_Os05g277101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g218701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g110901/11retrotransposon protein, putative, unclassified
LOC_Os07g071101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g177201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g182441/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g164301/11transposon protein, putative, unclassified
LOC_Os09g092001/11transposon protein, putative, unclassified
LOC_Os05g083001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g231901/11transposon protein, putative, Mutator sub-class
LOC_Os05g263101/11retrotransposon protein, putative, unclassified
LOC_Os04g139701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g161401/11transposon protein, putative, unclassified
LOC_Os11g177001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33020Os.2353.1.S1_at11/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33020Os.2353.2.S1_at8/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33030NANA3+18848240..18850265Transposable element protein, putative, Transposase_28
LOC_Os03g33040Os.47722.1.S1_at1/113+18850823..18851700hypothetical protein
LOC_Os03g33042NANA3+18855137..18856378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33044NANA3+18856940..18857569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33050Os.24831.3.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.1.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.4.S1_x_at1/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33060Os.46314.2.S1_x_at7/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_x_at3/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.10731.2.A1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060OsAffx.8785.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.47114.1.S1_x_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33070NANA3+18877363..18878008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g33074NANA3+18880611..18880893hypothetical protein
LOC_Os03g33080OsAffx.22421.1.S1_at3/113+18881397..18884091transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g33090Os.53259.1.A1_at11/113+18890072..18891221LOB domain protein 37, putative, expressed
LOC_Os03g33100OsAffx.8864.1.S1_at8/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33100Os.46273.1.S1_at2/113+18892422..18898625retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46314.2.S1_x_at--455--6811NONE
GTTTCTCCCAAATCCCATAGACAAG
NONE
Os.46314.2.S1_x_at--224--9511Chr01:17698095..17698256 (25 bp)
TCTCCCAAATCCCATAGACAAGAGT
NONE
Os.46314.2.S1_x_at--65--3812Chr06:27521665..27521959 (25 bp)
CTCCCAAATCCCATAGACAAGAGTA
NONE
Os.46314.2.S1_x_at--851--1253Chr01:17698247..17698271 (25 bp)
AGACAAGAGTACAGACCCAACCCCA
NONE
Os.46314.2.S1_x_at--286--179326Chr12:4349629..4349650 (22 bp)
ACGGCCGGAACCTCCGGGACAGATG
LOC_Os12g08564
Os.46314.2.S1_x_at--465--263286Chr12:6016070..6016192 (25 bp)
AACCTCCGGGACAGATGTCCATCGA
NONE
Os.46314.2.S1_x_at--723--619384Chr12:4349869..4349893 (25 bp)
GAGGCCCGAAGACCGGTCCTTATAT
LOC_Os12g08564
Os.46314.2.S1_x_at--816--397370Chr12:4280079..4280103 (25 bp)
CGGTCCTTATATGGCCGAGGTGCTA
NONE
Os.46314.2.S1_x_at--321--1019359Chr12:4280086..4280110 (25 bp)
TATATGGCCGAGGTGCTACTATCAA
NONE
Os.46314.2.S1_x_at--214--87377Chr12:4280089..4280113 (25 bp)
ATGGCCGAGGTGCTACTATCAAAAC
NONE
Os.46314.2.S1_x_at--682--449375Chr12:4280092..4280116 (25 bp)
GCCGAGGTGCTACTATCAAAACCAT
NONE
Target Sequence 
GTTTCTCCCAAATCCCATAGACAAGAGTACAGACCCAACCCCACCTACGGCCGGAACCTCCGGGACAGATGTCCATCGAC
CCCCGACTTCGTCCATCTCCATCCGTGTACTTTTGTTTATAACCAGACTGAGCCACAAACTAAGCCTTACCCACTAAACA
TGTGGAAGTACGGTAGTGCTTTGCAACAGAGGCCCGAAGACCGGTCCTTATATGGCCGAGGTGCTACTATCAAAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46314.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis