Browse Element(s) Details


Os.46383.2.A1_s_at

Description gb:CB652033
DB_XREF= gi:29655758
DB_XREF=OSJNEc01G14.r
CLONE=OSJNEc01G14
TID=Os.46383.2
CNT=25
FEA=EST
TIER=Stack
STK=9
UG=Os.46383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-C05, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4702011/11Phosphoribulokinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46962Os.11656.1.S1_at11/112+28667136..28670993VHS domain-containing protein, putative, expressed
LOC_Os02g46970Os.4377.1.S1_at11/112+28671336..286749954-coumarate-CoA ligase 2, putative, expressed
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0008974molecular_functionphosphoribulokinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46383.2.A1_s_at--780--9691Chr02:28697596..28697620 (25 bp)
TCACATGTTCTTATCCTGGCATCAA
LOC_Os02g47020
Os.46383.2.A1_s_at--43--3431Chr02:28697635..28697659 (25 bp)
CAGACACTTACTTTGGGCATGAGGT
LOC_Os02g47020
Os.46383.2.A1_s_at--1151--6231Chr02:28697902..28697926 (25 bp)
GATGGATGGCCAATTTGACAGACTA
LOC_Os02g47020
Os.46383.2.A1_s_at--886--10491Chr02:28697954..28697978 (25 bp)
TTAAGCAACCTCTCAACCAAATTTT
LOC_Os02g47020
Os.46383.2.A1_s_at--719--5051Chr02:28698024..28698048 (25 bp)
GCAGCAACAATGGAACAGGTCTCTT
LOC_Os02g47020
Os.46383.2.A1_s_at--934--2111Chr02:28698038..28698062 (25 bp)
ACAGGTCTCTTCCAAACTATCGTAG
LOC_Os02g47020
Os.46383.2.A1_s_at--469--10411Chr02:28698093..28698117 (25 bp)
TTATTGCTGAGAGGGCCGGTGCACC
LOC_Os02g47020
Os.46383.2.A1_s_at--813--3971Chr02:28698109..28698133 (25 bp)
CGGTGCACCTACTGAAGCGGCAAAA
LOC_Os02g47020
Os.46383.2.A1_s_at--933--191Chr02:28698156..28698180 (25 bp)
ATTTCGTGAATCTCTTCATCACCAT
LOC_Os02g47020
Os.46383.2.A1_s_at--294--371Chr02:28698186..28698210 (25 bp)
ATCAATGACAATGGGCATCCTCGCA
LOC_Os02g47020
Os.46383.2.A1_s_at--155--4991Chr02:28698200..28698224 (25 bp)
GCATCCTCGCATTTCTTGTAACTAG
LOC_Os02g47020
Target Sequence 
TCACATGTTCTTATCCTGGCATCAAATTTGCCTATGGCCCAGACACTTACTTTGGGCATGAGGTATCAGTGCTGGAGATG
GATGGCCAATTTGACAGACTAGATGAGCTTATCTATGTTGAGAGCCATTTAAGCAACCTCTCAACCAAATTTTATGGAGA
GGTGACACAGCAAATGCTAAAGCATGCAGACTTCCCCGGCAGCAACAATGGAACAGGTCTCTTCCAAACTATCGTAGGAC
TGAAGATTAGAGATCTCTATGAGCAGATTATTGCTGAGAGGGCCGGTGCACCTACTGAAGCGGCAAAAGTTTAATGAGCT
CCACATTCATATTTCGTGAATCTCTTCATCACCATACCATATCAATGACAATGGGCATCCTCGCATTTCTTGTAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46383.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis