Browse Element(s) Details


Os.46393.1.S1_x_at

Description gb:CF294984
DB_XREF= gi:33664017
DB_XREF=30DGS--04-L14.g1
CLONE=30DGS--04-L14
TID=Os.46393.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0095C07.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4199910/11expressed protein
LOC_Os10g419804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46393.1.S1_x_at--64--10571Chr10:22249243..22249267 (25 bp)
TTCTTCTGCTGTCTCCATTTGGAAG
LOC_Os10g41999
Os.46393.1.S1_x_at--273--7171Chr10:22249253..22249277 (25 bp)
GTCTCCATTTGGAAGGCGCTCCTGA
LOC_Os10g41999
Os.46393.1.S1_x_at--676--8511Chr10:22249262..22249286 (25 bp)
TGGAAGGCGCTCCTGATTCTCCTGG
LOC_Os10g41999
Os.46393.1.S1_x_at--519--4271Chr10:22249300..22249320 (21 bp)
CCTGCGCCCAGCTCAAGGAGGGAGA
LOC_Os10g41999
Os.46393.1.S1_x_at--793--5051Chr10:22249504..22249528 (25 bp)
GCAGCAGTATCGACGAGTGCGACGC
LOC_Os10g41999
Os.46393.1.S1_x_at--350--8511NONE
TGGTAGGAACGGAGCGCTGTATCCA
NONE
Os.46393.1.S1_x_at--535--6332Chr10:22253071..22253095 (25 bp)
GATGCACCGTTGCATACGGATGCTA
LOC_Os10g41999
Os.46393.1.S1_x_at--1089--6332Chr10:22253089..22253113 (25 bp)
GATGCTATGGAGGTCCTCCAGCTGC
LOC_Os10g41999
Os.46393.1.S1_x_at--1128--1592Chr10:22253108..22253132 (25 bp)
AGCTGCCAAACCATGACGATCGACA
LOC_Os10g41999
Os.46393.1.S1_x_at--1059--8931Chr10:22253121..22253145 (25 bp)
TGACGATCGACACACTACTCTGCTA
LOC_Os10g41999
Os.46393.1.S1_x_at--729--6392Chr10:22253174..22253198 (25 bp)
GATCGATCAATCTCATGGCCTGCGT
LOC_Os10g41999
Target Sequence 
TTCTTCTGCTGTCTCCATTTGGAAGGCGCTCCTGATTCTCCTGGCTCTCATCTGCGCCCTGCGCCCAGCTCAAGGAGGGA
GAGGTGTGTCCNTGGGATATCCAGGTCCTCGTTCCANCAAGGCCAGCAGTTACTCCANGGGCGGCGTGGGATGCAGCAGT
ATCGACGAGTGCGACGCCCCTCCAGCTCCAGGNNNAGNAGNNNNANCANNNGCAATTGGTAGGAACGGAGCGCTGTATCC
ACCACGGTACCCGGTGCCCAGGATTCCCGGCGAACCTTACACACGCCCGGGACGGNGATGCACCGTTGCATACGGATGCT
ATGGAGGTCCTCCAGCTGCCAAACCATGACGATCGACACACTACTCTGCTACTGCTACTGCATGTTCACTTGTTATTTCG
ATCGATCAATCTCATGGCCTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46393.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis