Browse Element(s) Details


Os.46418.1.S1_at

Description gb:NM_197538.1
DB_XREF= gi:37536435
TID=Os.46418.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0060I05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0060I05.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3910011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46418.1.S1_at--419--8671Chr10:20513841..20513865 (25 bp)
TGTGTGTCTTACATGCTGCGCAAAC
LOC_Os10g39100
Os.46418.1.S1_at--12--2391Chr10:20513862..20513886 (25 bp)
AAACGTGCGCTCTACAATGACATGT
LOC_Os10g39100
Os.46418.1.S1_at--18--7471Chr10:20514258..20514399 (25 bp)
GTGTGCCTTGCAACCGAGGTGTTCT
LOC_Os10g39100
Os.46418.1.S1_at--590--8791Chr10:20514402..20514426 (25 bp)
TGCTTTGGTAACTCGGTGGCTTCAA
LOC_Os10g39100
Os.46418.1.S1_at--763--10511Chr10:20514422..20514446 (25 bp)
TTCAACCAGGTTCCTGCTGCAAGAT
LOC_Os10g39100
Os.46418.1.S1_at--882--10511Chr10:20514450..20514474 (25 bp)
TTCAACATTCAGACAACCCAGTGCG
LOC_Os10g39100
Os.46418.1.S1_at--942--3151Chr10:20514777..20514801 (25 bp)
AATTCGCCTGCATCTGTTCGCTGGT
LOC_Os10g39100
Os.46418.1.S1_at--163--5071Chr10:20514816..20514840 (25 bp)
GCAGCGAAGAACTTTCCGAGGCCTC
LOC_Os10g39100
Os.46418.1.S1_at--227--6231Chr10:20514833..20514857 (25 bp)
GAGGCCTCGCAGTTGATTTCCTGCA
LOC_Os10g39100
Os.46418.1.S1_at--280--9931Chr10:20514872..20514990 (25 bp)
TACTGGACGGTTTGCTCTTGTATGC
LOC_Os10g39100
Os.46418.1.S1_at--1028--2811Chr10:20515124..20515148 (25 bp)
AAGTTTGGACCTATGACAGTGCCTC
LOC_Os10g39100
Target Sequence 
TGTGTGTCTTACATGCTGCGCAAACGTGCGCTCTACAATGACATGTCGAGATATGTGTGCTGTGCTGGGTACATGCCATG
CAGCGGGAGATGCGGCGAGAGCAACTGCCCCGAAGTGTGCCTTGCAACCGAGGTGTTCTGCTGCTTTGGTAACTCGGTGG
CTTCAACCAGGTTCCTGCTGCAAGATGAGTTCAACATTCAGACAACCCAGTGCGACAACTGCATCATTGGCTTCATGTTT
TGTCTCCAACAATTCGCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGTT
GATTTCCTGCATATCTAACATGGTCTACTGGACGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGA
GGGACGGCAAGTTTGGACCTATGACAGTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis