Browse Element(s) Details


Os.4642.1.A1_s_at

Description gb:CR281234
DB_XREF= gi:44667800
DB_XREF=CR281234
CLONE=y851g01p3
TID=Os.4642.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4642 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565895.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2423011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed
LOC_Os09g24230Os.4642.1.A1_s_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24230OsAffx.17869.1.S1_at11/119+14386517..14388887haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os09g24240Os.54262.1.S1_at11/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24240Os.31147.1.S1_at1/119+14389339..14391933pentatricopeptide, putative, expressed
LOC_Os09g24250Os.7411.1.S1_at11/119+14393505..14398400ubiquitin specific protease 39, putative, expressed
LOC_Os09g24260Os.20194.1.A1_at11/119+14403670..14415594transducin family protein, putative, expressed
LOC_Os09g24260OsAffx.17870.1.S1_x_at11/119+14403670..14415594transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4642.1.A1_s_at--487--8891Chr09:14386920..14386942 (23 bp)
TGAGGATTCTGCTTCAGGCACACGT
LOC_Os09g24230
Os.4642.1.A1_s_at--1156--1351Chr09:14386845..14386869 (25 bp)
AGAGAAGTCCCTACTGGATGCAGGA
LOC_Os09g24230
Os.4642.1.A1_s_at--687--9051Chr09:14386827..14386851 (25 bp)
TGCAGGAGCCACGTTGATCATCAAG
LOC_Os09g24230
Os.4642.1.A1_s_at--633--7931Chr09:14386803..14386827 (25 bp)
GGATTATGAAGACCCCAAGCTTTGG
LOC_Os09g24230
Os.4642.1.A1_s_at--989--1551Chr09:14386786..14386810 (25 bp)
AGCTTTGGAGCGCACTTGAAGAGAT
LOC_Os09g24230
Os.4642.1.A1_s_at--626--3471Chr09:14386691..14386715 (25 bp)
CAGGTTTAGCTCCTTTTGCATTTGC
LOC_Os09g24230
Os.4642.1.A1_s_at--847--4951Chr09:14386674..14386698 (25 bp)
GCATTTGCAGTAATATTGTAGCCGA
LOC_Os09g24230
Os.4642.1.A1_s_at--914--1111Chr09:14386649..14386673 (25 bp)
AGTGATGGCGCACAGAGCTCATCTT
LOC_Os09g24230
Os.4642.1.A1_s_at--262--3691Chr09:14386627..14386651 (25 bp)
CTTTGCACTTTTGAGCTTCTGTGGT
LOC_Os09g24230
Os.4642.1.A1_s_at--143--171Chr09:14386599..14386623 (25 bp)
ATTATTCTTTGTTGCTACTCAGCCT
LOC_Os09g24230
Os.4642.1.A1_s_at--849--9651Chr09:14386581..14386605 (25 bp)
TCAGCCTATTGAGTTGGTACAGAGA
LOC_Os09g24230
Target Sequence 
TGAGGATTCTGCTTCAGGCACACGTGCAGNCGTTGCTGCTGGAATTCCTGTTGTTNCTGTGGCAACAAGGAACCCAGAGA
AGTCCCTACTGGATGCAGGAGCCACGTTGATCATCAAGGATTATGAAGACCCCAAGCTTTGGAGCGCACTTGAAGAGATA
GACAGAGAGGAAGCCAAGCTAAAGAAAGCTGATGCATGAGATGAGGGTTCTCGATTAGATGATATATTGCAGGTTTAGCT
CCTTTTGCATTTGCAGTAATATTGTAGCCGAAGTGATGGCGCACAGAGCTCATCTTTGCACTTTTGAGCTTCTGTGGTTT
TATTATTCTTTGTTGCTACTCAGCCTATTGAGTTGGTACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4642.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis