Browse Element(s) Details


Os.46477.1.S1_at

Description gb:AK073016.1
DB_XREF= gi:32983039
TID=Os.46477.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-ketoacyl-CoA synthase (OSJNBa0032I20.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149L14, full insert sequence.
FL= gb:AK073016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g280604/11Fatty acid elongase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46477.1.S1_at--1048--3231Chr10:14231713..14231737 (25 bp)
CAAGCTCTCGCCGTGGGACATGGAG
LOC_Os10g28060
Os.46477.1.S1_at--89--9011Chr10:14231477..14231501 (25 bp)
TGAAGGAGGTGGACATGCTCCCCGT
LOC_Os10g28060
Os.46477.1.S1_at--629--2891Chr10:14231442..14231466 (25 bp)
AAGGTGGCGCCCATCGATGAGACCT
LOC_Os10g28060
Os.46477.1.S1_at--204--3551Chr10:14231431..14231455 (25 bp)
CATCGATGAGACCTCCTACCAGATC
LOC_Os10g28060
Os.46477.1.S1_at--749--3811Chr10:14231419..14231443 (25 bp)
CTCCTACCAGATCCCAAACTAATAA
NONE
Os.46477.1.S1_at--690--6951Chr10:14231353..14231377 (25 bp)
GTAGACTTCTTGTTCTGTCGATCGA
NONE
Os.46477.1.S1_at--881--6411Chr10:14231322..14231346 (25 bp)
GATCTCAAGAATATGGAGCCATTGC
NONE
Os.46477.1.S1_at--110--4451Chr10:14231305..14231329 (25 bp)
GCCATTGCTAGGCTGCTTATGTATG
NONE
Os.46477.1.S1_at--944--9071Chr10:14231300..14231324 (25 bp)
TGCTAGGCTGCTTATGTATGATGAT
NONE
Os.46477.1.S1_at--1159--6491Chr10:14231269..14231293 (25 bp)
GATAGGCCTTTATTATTAGGGCTTA
NONE
Os.46477.1.S1_at--1064--1051Chr10:14231252..14231276 (25 bp)
AGGGCTTAATTTGGCTATTAATCAA
NONE
Target Sequence 
CAAGCTCTCGCCGTGGGACATGGAGCCGTCGCGGATGACGCTCTACCGCTTCGGCAACACGTCCAGCAGCTCGCTGTGGT
ACGAGCTCGCCTACTGCGAGGCCAAGGGGAGGATCAAGCGCGGCGACCGGGTGTGGCAGATCGCCTTCGGCTCCGGGTTC
AAGTGCAACAGCGCCGTGTGGAGGGCGCTGCGCACCGTCGACGCCGCGGGCCTCGACGCCGGCGACAACCCGTGGATGAA
GGAGGTGGACATGCTCCCCGTCGACGTGCCCAAGGTGGCGCCCATCGATGAGACCTCCTACCAGATCCCAAACTAATAAG
GGGATATATGAGGCTATATAGCTATTATAATTTATAAGTAGTAGACTTCTTGTTCTGTCGATCGATATGATGATCTCAAG
AATATGGAGCCATTGCTAGGCTGCTTATGTATGATGATGATGATGATAGGCCTTTATTATTAGGGCTTAATTTGGCTATT
AATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis