Browse Element(s) Details


Os.46488.1.S1_at

Description gb:AK071590.1
DB_XREF= gi:32981613
TID=Os.46488.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBb0016M10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100N02, full insert sequence.
FL= gb:AK071590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0579011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein
LOC_Os10g05800Os.8494.1.S1_at10/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05800Os.8143.1.S2_at1/1110+2909382..2918253F-box domain containing protein, expressed
LOC_Os10g05810OsAffx.8512.1.S1_at11/1110+2920104..2923951transposon protein, putative, Mutator sub-class
LOC_Os10g05820Os.21524.1.S1_at11/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.21524.2.S1_x_at8/1110+2925955..2927113proline-rich protein, putative, expressed
LOC_Os10g05820Os.46085.1.S1_x_at5/1110+2925955..2927113proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0009826biological_processunidimensional cell growth
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46488.1.S1_at--726--4051Chr10:2906146..2906170 (25 bp)
CGATCGATCGAGTTCACTGCTCGAT
LOC_Os10g05790
Os.46488.1.S1_at--159--4031Chr10:2906125..2906149 (25 bp)
CGATCTCCATTTCCACCAAATAAGT
LOC_Os10g05790
Os.46488.1.S1_at--1078--6291Chr10:2906099..2906123 (25 bp)
GATGATGTAGCTACTGTATCTCGCA
LOC_Os10g05790
Os.46488.1.S1_at--842--6891Chr10:2906084..2906108 (25 bp)
GTATCTCGCAACTACTGGCGTGCAT
LOC_Os10g05790
Os.46488.1.S1_at--560--1951Chr10:2906071..2906095 (25 bp)
ACTGGCGTGCATTTCATTTATCGGA
LOC_Os10g05790
Os.46488.1.S1_at--581--2971Chr10:2906040..2906064 (25 bp)
AATGGATGCAAAGCCACGCGTGCGT
LOC_Os10g05790
Os.46488.1.S1_at--932--3351Chr10:2906026..2906050 (25 bp)
CACGCGTGCGTGTTCATGGCTTCTT
LOC_Os10g05790
Os.46488.1.S1_at--1042--851Chr10:2906011..2906035 (25 bp)
ATGGCTTCTTGCGTGTTTACGGCAT
LOC_Os10g05790
Os.46488.1.S1_at--860--9911Chr10:2905994..2906018 (25 bp)
TACGGCATTTGGGAATGTGCTTTGC
LOC_Os10g05790
Os.46488.1.S1_at--569--771Chr10:2905980..2906004 (25 bp)
ATGTGCTTTGCATGCGCTGAATTGA
LOC_Os10g05790
Os.46488.1.S1_at--602--6531Chr10:2905951..2905975 (25 bp)
GATTTTAACAATGCAGTACGTGATA
LOC_Os10g05790
Target Sequence 
CGATCGATCGAGTTCACTGCTCGATCTCCATTTCCACCAAATAAGTTGATGATGTAGCTACTGTATCTCGCAACTACTGG
CGTGCATTTCATTTATCGGAGAAATTAATGGATGCAAAGCCACGCGTGCGTGTTCATGGCTTCTTGCGTGTTTACGGCAT
TTGGGAATGTGCTTTGCATGCGCTGAATTGATGTTGATTTTAACAATGCAGTACGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis