Browse Element(s) Details


Os.46546.1.S1_at

Description gb:AK065895.1
DB_XREF= gi:32975913
TID=Os.46546.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proton-dependent oligopeptide transport (OJ1208D02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049E13, full insert sequence.
FL= gb:AK065895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2256010/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46546.1.S1_at--527--8731Chr10:11360034..11360058 (25 bp)
TGTCATCATCGTGACGTACTCCATT
LOC_Os10g22560
Os.46546.1.S1_at--208--511Chr10:11360027..11360051 (25 bp)
ATCGTGACGTACTCCATTCTTCCGT
LOC_Os10g22560
Os.46546.1.S1_at--920--111Chr10:11360012..11360036 (25 bp)
ATTCTTCCGTCTCAAGGGCTCATGC
LOC_Os10g22560
Os.46546.1.S1_at--243--1091Chr10:11359998..11360022 (25 bp)
AGGGCTCATGCCCTGCGTATATACT
LOC_Os10g22560
Os.46546.1.S1_at--57--611Chr10:11359991..11360015 (25 bp)
ATGCCCTGCGTATATACTCCTGCAA
LOC_Os10g22560
Os.46546.1.S1_at--1126--10171Chr10:11359979..11360003 (25 bp)
TATACTCCTGCAAATGTGTTCTCAT
LOC_Os10g22560
Os.46546.1.S1_at--453--791Chr10:11359966..11359990 (25 bp)
ATGTGTTCTCATTTCTTGTTCTGTC
LOC_Os10g22560
Os.46546.1.S1_at--21--10551Chr10:11359954..11359978 (25 bp)
TTCTTGTTCTGTCTCCAGGATTGAG
LOC_Os10g22560
Os.46546.1.S1_at--478--5251Chr10:11359842..11359866 (25 bp)
GAATGATCGATTAACTAGACTAAAG
LOC_Os10g22560
Os.46546.1.S1_at--350--8831Chr10:11359805..11359830 (25 bp)
TGATACTCTGTTTAAATTCCTCTAA
LOC_Os10g22560
Os.46546.1.S1_at--579--5331NONE
GAAGTAATACAGAAATGATCCTCAT
NONE
Target Sequence 
TGTCATCATCGTGACGTACTCCATTCTTCCGTCTCAAGGGCTCATGCCCTGCGTATATACTCCTGCAAATGTGTTCTCAT
TTCTTGTTCTGTCTCCAGGATTGAGAAAACGGAGTAACAGGAAGCCCCGGATTTTATTTTAACAGAAATNTAAGTGCAAA
ACAAATAATTTTATAATATAAGAGTAACACAAGAATGATCGATTAACTAGACTAAAGTAATACAGGAATGATACTCTGTT
TAAATTCCTCTAAAACTTATATGGATCAGAAGTAATACAGAAATGATCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis