Browse Element(s) Details


Os.46550.2.S1_at

Description gb:NM_197174.1
DB_XREF= gi:37535707
TID=Os.46550.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46550 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.19), mRNA.
PROD=putative membrane-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g354366/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46550.2.S1_at--283--2131NONE
ACAGAGTTACTCTGTGGTGATGGCG
NONE
Os.46550.2.S1_at--365--4131NONE
CGCAGGCGCTCTCAGATCGGTTATG
NONE
Os.46550.2.S1_at--351--5011NONE
GCAGGCGCTCTCAGATCGGTTATGC
NONE
Os.46550.2.S1_at--832--891NONE
AGGCGCTCTCAGATCGGTTATGCGG
NONE
Os.46550.2.S1_at--822--9511Chr10:18613269..18613290 (22 bp)
TCTCAGATCGGTTATGCGGGAGCGC
LOC_Os10g35436
Os.46550.2.S1_at--344--9651Chr10:18613269..18613292 (24 bp)
TCAGATCGGTTATGCGGGAGCGCAA
LOC_Os10g35436
Os.46550.2.S1_at--823--9431Chr10:18613273..18613297 (25 bp)
TCGGTTATGCGGGAGCGCAACAAAA
LOC_Os10g35436
Os.46550.2.S1_at--128--9152Chr10:18613280..18613304 (25 bp)
TGCGGGAGCGCAACAAAAGTATGGC
LOC_Os10g35436
Os.46550.2.S1_at--873--3272Chr10:18613290..18613314 (25 bp)
CAACAAAAGTATGGCGTGGCGGCGC
LOC_Os10g35436
Os.46550.2.S1_at--137--7811Chr10:18613378..18613860 (25 bp)
GGTAACGCGGAACCGAGCTCAGCAC
LOC_Os10g35436
Os.46550.2.S1_at--172--2611NONE
AACGCGGAACCGAGCTCAGCACTAC
NONE
Target Sequence 
ACAGAGTTACTCTGTGGTGATGGCGGGGGGCGACCGTGGCCGAGGCGTGGAGTGCCATCCGCATCAGGGTGTATCGGCCG
CGCTGCTCCGCCCTGGTCCGCAGGCTTTGGCGGCGAGCTGGCGGCGGAGGGAGACTGTGGTGAGATCGGATTTCGCCGCT
GGTGGTGTCGCTACCATGGGGGATTCGCCGCAGGCGCTCTCAGATCGGTTATGCGGGAGCGCAACAAAAGTATGGCGTGG
CGGCGCGGAGTGGACGGCCGAGGCGTTCGCGCGGAATGGGGCTGCGGGACCGAGCCAGTCTCGCTTGCCGGTAACGCGGA
ACCGAGCTCAGCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46550.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis