Browse Element(s) Details


Os.46632.1.S1_at

Description gb:CA765892
DB_XREF= gi:27547811
DB_XREF=AF53-Rpf_09_E18_T7_067.ab1
CLONE=C0003186
TID=Os.46632.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0001O14.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46632.1.S1_at--610--711Chr10:20973612..20973636 (25 bp)
ATGATGTTCATCAATTCCTACCCAG
LOC_Os10g39800
Os.46632.1.S1_at--1075--3311Chr10:20973790..20973814 (25 bp)
CACTTGTTCCTAACAGTGCAGACAA
LOC_Os10g39800
Os.46632.1.S1_at--983--911Chr10:20974034..20974058 (25 bp)
AGGCAGCAGTGATCAAACTCACCTA
LOC_Os10g39800
Os.46632.1.S1_at--356--2391Chr10:20974048..20974072 (25 bp)
AAACTCACCTACTGAAATCACCAGC
LOC_Os10g39800
Os.46632.1.S1_at--300--5591Chr10:20974061..20974085 (25 bp)
GAAATCACCAGCTCCAAGTGTTAGG
LOC_Os10g39800
Os.46632.1.S1_at--49--10351Chr10:20974111..20974135 (25 bp)
TTTTCCTTAAATGGCGTCGGTGCCA
LOC_Os10g39800
Os.46632.1.S1_at--491--4611Chr10:20974124..20974148 (25 bp)
GCGTCGGTGCCAAAAGTATTAGAGT
LOC_Os10g39800
Os.46632.1.S1_at--845--1151Chr10:20974146..20974170 (25 bp)
AGTCGTGGGTGCATTACTCTACGTC
LOC_Os10g39800
Os.46632.1.S1_at--247--7331Chr10:20974154..20974178 (25 bp)
GTGCATTACTCTACGTCAGTACCTA
LOC_Os10g39800
Os.46632.1.S1_at--1067--3991Chr10:20974167..20974191 (25 bp)
CGTCAGTACCTACAATGCCTACAAT
LOC_Os10g39800
Os.46632.1.S1_at--314--271Chr10:20974277..20974301 (25 bp)
ATATGGTCAGATTGCTAGAGTTCTC
LOC_Os10g39800
Target Sequence 
ATGATGTTCATCAATTCCTACCCAGAAACTGGGTTGGANCCAGCTGCTTTTGCAGCACTTGTTCCTAACAGTGCAGACAA
GATTCTTGGTGAGGTGATCGAGGAAATAATGGGTGACCACGAGATGCTGNNNCNNNTNNNNNNNGANNNNNNTNNAANNT
NNNNNNNNNNNTAAGCTGATGGAAAGGCCCATGAAGAGAAATCAGGCAGCAGTGATCAAACTCACCTACTGAAATCACCA
GCTCCAAGTGTTAGGATTATATGTGTAAACTAGGATTTTTTTCCTTAAATGGCGTCGGTGCCAAAAGTATTAGAGTCGTG
GGTGCATTACTCTACGTCAGTACCTACAATGCCTACAATTAAGATGGGAAGGCTCTAAGAATCAGAGGGAGATTAACCAT
GTCAAACATGAACCATAATGGCTCAAATGGTGGTTGGCTGATGGATATGGTCAGATTGCTAGAGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis