Browse Element(s) Details


Os.46666.1.S1_at

Description gb:AK120765.1
DB_XREF= gi:37990388
TID=Os.46666.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative casein kinase (OSJNBa0026O12.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007I07, full insert sequence.
FL= gb:AK120765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3365011/11Casein kinase I, epsilon isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46666.1.S1_at--887--6211Chr10:17413705..17413729 (25 bp)
GTTGACCGACCAGACAAAACTTCAG
LOC_Os10g33650
Os.46666.1.S1_at--791--1231Chr10:17413836..17413860 (25 bp)
AGATTTACCGGTGCTGTTGAGGCCT
LOC_Os10g33650
Os.46666.1.S1_at--55--4751Chr10:17413848..17413872 (25 bp)
GCTGTTGAGGCCTTCGCCAGAAGAA
LOC_Os10g33650
Os.46666.1.S1_at--164--7831Chr10:17413878..17413902 (25 bp)
GGTTCCGGTCGCCTCGGAGACAATT
LOC_Os10g33650
Os.46666.1.S1_at--963--10671Chr10:17413901..17413925 (25 bp)
TTCCAGGCACAAAAGCCTCGCGGAT
LOC_Os10g33650
Os.46666.1.S1_at--760--3791Chr10:17413917..17413941 (25 bp)
CTCGCGGATTCCTTTGGTTCATCTA
LOC_Os10g33650
Os.46666.1.S1_at--340--10251Chr10:17413929..17413951 (23 bp)
TTTGGTTCATCTACAGAAGCTGTTG
LOC_Os10g33650
Os.46666.1.S1_at--139--4751Chr10:17414383..17414404 (22 bp)
GCTGTTGTTGATTCGGAGAGAACAC
LOC_Os10g33650
Os.46666.1.S1_at--684--6011Chr10:17414395..17414419 (25 bp)
GAGAGAACACGAACCATATCCAGGA
LOC_Os10g33650
Os.46666.1.S1_at--804--971Chr10:17414422..17414446 (25 bp)
AGGAGCTCGGCGAAGATGCCCACCG
LOC_Os10g33650
Os.46666.1.S1_at--160--951Chr10:17414689..17414713 (25 bp)
AGGAAGTGAAGTGAGCCTCCGCCGC
LOC_Os10g33650
Target Sequence 
GTTGACCGACCAGACAAAACTTCAGTGGGACAAGAGATCCGGGATAGATTTACCGGTGCTGTTGAGGCCTTCGCCAGAAG
AAACCCGGGTTCCGGTCGCCTCGGAGACAATTCCAGGCACAAAAGCCTCGCGGATTCCTTTGGTTCATCTACAGAAGCTG
TTGTTGATTCGGAGAGAACACGAACCATATCCAGGAACAGGAGCTCGGCGAAGATGCCCACCGCCGCCGCCGCCGCCACC
CCGTCTAGCCGGGGGACATCCTCGAAAGGCGACGGCGGCGAGCAGAACCGGGCCGGCCGGTGGGTGTCGAGCGGCAGCGG
CAGCAACCGCCCGTCCCCCGCCGCCGCCCAGCGGCACCACCACCACCACCACCACTCGGCCGCCGCGGACGACAGGTCGC
CGCCGGCAGCGAAGGGGGGCACCGCTATCCGGTGCTTCGAGCGCCTCTCGATCGGCGGCGAGAGGAGGAAGTGAAGTGAG
CCTCCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis