Browse Element(s) Details


Os.46702.1.S1_at

Description gb:AK119350.1
DB_XREF= gi:37988973
TID=Os.46702.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-galactosidase (OSJNBb0008A05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F02, full insert sequence.
FL= gb:AK119350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1840011/11Beta-galactosidase precursor, putative, expressed
LOC_Os06g423102/11Glycosyl hydrolases family 35 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46702.1.S1_at--599--3491Chr10:9024523..9024547 (25 bp)
CAGGCTCTGTGTGCGTGTCCGCTGA
LOC_Os10g18400
Os.46702.1.S1_at--341--7652Chr10:9024553..9024577 (25 bp)
GGGATGCCATCACACTATCCTGCGG
LOC_Os10g18400
Os.46702.1.S1_at--790--2031Chr10:9024566..9024590 (25 bp)
ACTATCCTGCGGTCAACACAGCAAA
LOC_Os10g18400
Os.46702.1.S1_at--1018--2131Chr10:9024583..9024607 (25 bp)
ACAGCAAAACCATCTCGACCATCGA
LOC_Os10g18400
Os.46702.1.S1_at--140--3551Chr10:9024602..9024626 (25 bp)
CATCGACGTGACCAGCTTTGGTGTT
LOC_Os10g18400
Os.46702.1.S1_at--921--3191Chr10:9024668..9024692 (25 bp)
CAAGGCTGCGTACAAGGCTTTCACA
LOC_Os10g18400
Os.46702.1.S1_at--642--3671Chr10:9024685..9024709 (25 bp)
CTTTCACAGAAGCTTGCCTTGGGAA
LOC_Os10g18400
Os.46702.1.S1_at--956--4432Chr10:9024700..9024724 (25 bp)
GCCTTGGGAAGGAGTCATGCACAGT
LOC_Os10g18400
Os.46702.1.S1_at--175--4011Chr10:9024776..9024800 (25 bp)
CGTCCAAGCCTCATGTTGATGCATT
LOC_Os10g18400
Os.46702.1.S1_at--604--9091Chr10:9024839..9024863 (25 bp)
TGCTCTAGGAAAACCTGGTGCATGT
LOC_Os10g18400
Os.46702.1.S1_at--395--10231Chr10:9024989..9025013 (25 bp)
TATTGTCTTTACTTTGTTTCGTGGA
LOC_Os10g18400
Target Sequence 
CAGGCTCTGTGTGCGTGTCCGCTGAGGTTGGGGATGCCATCACACTATCCTGCGGTCAACACAGCAAAACCATCTCGACC
ATCGACGTGACCAGCTTTGGTGTTGCGCGTGGTCAGTGCGGCGCCTATGAGGGTGGGTGCGAGTCCAAGGCTGCGTACAA
GGCTTTCACAGAAGCTTGCCTTGGGAAGGAGTCATGCACAGTGCAAATCATTAATGCTCTCACCGGCTCCGGGTGCCTCT
CCGGCGTCCTCACCGTCCAAGCCTCATGTTGATGCATTATTGGGGTCTAATAATTAGATTTGGTTTGTTTAGATTATGCT
CTAGGAAAACCTGGTGCATGTATTAAGTTCAATATTAAACTAGAGTCTTATATATGTGAGTTAAATTGGAGTGTGATCAA
GTAATCTTAGATCGTGTGATATTGGAACAATTTGCATCTATATAGTATTTTTGTGAGTGAAAAAGTTATTGTCTTTACTT
TGTTTCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis