Browse Element(s) Details


Os.4671.2.S1_a_at

Description gb:AK099404.1
DB_XREF= gi:32984613
TID=Os.4671.2
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Mannose-Binding Rice Lectin (P0440D10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full insert sequence.
FL= gb:AK101695.1 gb:AK099404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4247011/11F-box protein FBL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4671.2.S1_a_at--720--5791Chr04:24908283..24908307 (25 bp)
GACGCTGCTTAACCTATCTCAAAAT
LOC_Os04g42470
Os.4671.2.S1_a_at--108--5171Chr04:24908257..24908281 (25 bp)
GCAACCTCACTGACAAATCCTTAGA
LOC_Os04g42470
Os.4671.2.S1_a_at--519--2531Chr04:24908108..24908132 (25 bp)
AACTCTCGGGTGTCGAATTCTGGGC
LOC_Os04g42470
Os.4671.2.S1_a_at--1137--1431Chr04:24908062..24908086 (25 bp)
AGAACCTGAGGTCCTTGTCTCTGGA
LOC_Os04g42470
Os.4671.2.S1_a_at--771--1131Chr04:24908038..24908062 (25 bp)
AGTCCTGCAAGGTGACCGCGATTGA
LOC_Os04g42470
Os.4671.2.S1_a_at--860--8391Chr04:24907966..24907990 (25 bp)
GGCCCGAGTAATCTGGTAGCTGCAC
LOC_Os04g42470
Os.4671.2.S1_a_at--947--751Chr04:24907931..24907955 (25 bp)
ATGTAAATATCCACCTGCTTAGAGC
LOC_Os04g42470
Os.4671.2.S1_a_at--238--2691Chr04:24907877..24907901 (25 bp)
AAGCTCGAGTGATCTGTACGTCAGT
LOC_Os04g42470
Os.4671.2.S1_a_at--512--1891Chr04:24907860..24907884 (25 bp)
ACGTCAGTCCTGCTTGTATCGGTGT
LOC_Os04g42470
Os.4671.2.S1_a_at--584--8731Chr04:24907728..24907752 (25 bp)
TGTAAATATGGCGTGCTTCCTCTGC
LOC_Os04g42470
Os.4671.2.S1_a_at--936--4911Chr04:24907714..24907738 (25 bp)
GCTTCCTCTGCATTTTCGATGTTAT
LOC_Os04g42470
Target Sequence 
GACGCTGCTTAACCTATCTCAAAATGGCAACCTCACTGACAAATCCTTAGAGCTGATTTCCCGCCTCACTGCCTTGGTCT
CCCTGAACGTGTCGAACTCTCGGGTGTCGAATTCTGGGCTCCACCATCTGAAGCCACTCCAGAACCTGAGGTCCTTGTCT
CTGGAGTCCTGCAAGGTGACCGCGATTGAGATCAAGAAGCTCCAGTTGGCTGCCCTGCCCAATCTCGTCAGTGTGCGGCC
CGAGTAATCTGGTAGCTGCACATGTGTCCACATGTAAATATCCACCTGCTTAGAGCAGGACAAATGTACATATTCCCACA
AGAACAAGCTCGAGTGATCTGTACGTCAGTCCTGCTTGTATCGGTGTGTCTGGTCGCCCTGGTGCTGAAGGGTCTGATGG
ATGGCCTAGTGGTGAAGGGCTGGCACGTATTTAGGCCGTGTAAATATGTAGCGGTGCTGATGGGAAGGAACAACTGTAAA
TATGGCGTGCTTCCTCTGCATTTTCGATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4671.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis