Browse Element(s) Details


Os.46740.1.A1_at

Description gb:NM_194520.1
DB_XREF= gi:37530399
TID=Os.46740.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46740 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative histidine decarboxylase (OSJNBa0071K19.20), mRNA.
PROD=putative histidine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0164011/11Histidine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46740.1.A1_at--298--8151Chr10:414244..414268 (25 bp)
GGAAATGCACGATACCTCGAGGTAT
LOC_Os10g01640
Os.46740.1.A1_at--837--2811Chr10:414278..414302 (25 bp)
AAGTTGGTATAAGCGCATCTTGCAA
LOC_Os10g01640
Os.46740.1.A1_at--1035--31Chr10:414349..414373 (25 bp)
ATTGTGTGTAGGTGGCAACTTGCTT
LOC_Os10g01640
Os.46740.1.A1_at--643--7531Chr10:414360..414384 (25 bp)
GTGGCAACTTGCTTGTGAGGGAAAT
LOC_Os10g01640
Os.46740.1.A1_at--1016--8811Chr10:414396..414420 (25 bp)
TGTTGTGATGCCAAATGTCACTTTT
LOC_Os10g01640
Os.46740.1.A1_at--914--5511Chr10:414421..414445 (25 bp)
GAAAAGCTCACAGTTTTTGTTGAAG
LOC_Os10g01640
Os.46740.1.A1_at--1051--1051Chr10:414482..414506 (25 bp)
AGGGATTCGATATTCCATGCCTTGC
LOC_Os10g01640
Os.46740.1.A1_at--915--71Chr10:414493..414517 (25 bp)
ATTCCATGCCTTGCGGTTGACATTG
LOC_Os10g01640
Os.46740.1.A1_at--549--3172Chr10:414526..414550 (25 bp)
AATTGTTATTGCAACCTGCACGCAA
LOC_Os10g01640
Os.46740.1.A1_at--560--9851Chr10:414655..414679 (25 bp)
TACAAATGTAGCTTGTTCTTCTTTT
LOC_Os10g01640
Os.46740.1.A1_at--184--3631Chr10:414693..414717 (25 bp)
CTTGTTATTCCTTTCCTCAAAGCAT
LOC_Os10g01640
Target Sequence 
GGAAATGCACGATACCTCGAGGTATTATTGAAACAAGTTGGTATAAGCGCATCTTGCAATACATTAAGCAACATAGTGGT
GTTTGAAAGGCCAAAGGATGAAAGAATTGTGTGTAGGTGGCAACTTGCTTGTGAGGGAAATTTAGCACATATTGTTGTGA
TGCCAAATGTCACTTTTGAAAAGCTCACAGTTTTTGTTGAAGAGCTTGCTGAGAAGAGAAANGATTGGTATCAGGACAAG
GGATTCGATATTCCATGCCTTGCGGTTGACATTGGCAAGGAAAATTGTTATTGCAACCTGCACGCAAAAAAGTTAAGAAT
TCCTAAAATGTGACTGTAGAAGTGTTGCAAGTTACATATTCTTTGTAACTTGGTTGTTTTTTTTACAAGTGTAACCTTAT
GATAAACATTACAAATGTAGCTTGTTCTTCTTTTTTTATGGAAATAACTTGTTATTCCTTTCCTCAAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46740.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis