Browse Element(s) Details


Os.46824.1.S1_x_at

Description gb:AK122019.1
DB_XREF= gi:37991642
TID=Os.46824.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111M24, full insert sequence.
FL= gb:AK122019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4162011/11SNF2 family N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41590Os.12951.1.S1_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41590Os.48056.1.S1_s_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41640Os.22822.1.S1_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640Os.22822.1.S1_x_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_x_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41650Os.18619.1.S1_at11/1110+22095989..22098088F-box domain containing protein, expressed
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46824.1.S1_x_at--1093--5991Chr10:22080138..22080162 (25 bp)
GAGAGTCCGGACAATTTCATGAAAA
LOC_Os10g41620
Os.46824.1.S1_x_at--806--8391Chr10:22080197..22080221 (25 bp)
GGCGCATCTGCGCAATTGATAAAAG
LOC_Os10g41620
Os.46824.1.S1_x_at--892--2511Chr10:22080344..22080368 (25 bp)
AACTTGTTAGCCCTTTTGTATTGAG
LOC_Os10g41620
Os.46824.1.S1_x_at--856--5231Chr10:22080390..22080414 (25 bp)
GAATAGCGCCTCTAAACTTGGTACT
LOC_Os10g41620
Os.46824.1.S1_x_at--318--8671Chr10:22080431..22080455 (25 bp)
TGTGGTTGAAGATCTCTGCTGCTCA
LOC_Os10g41620
Os.46824.1.S1_x_at--538--10411Chr10:22080572..22080596 (25 bp)
TTTTGGGAGATGAGCCTGGCACACC
LOC_Os10g41620
Os.46824.1.S1_x_at--79--2171Chr10:22080592..22080614 (23 bp)
ACACCTTTGGCAGCTTCTCAAGTTG
LOC_Os10g41620
Os.46824.1.S1_x_at--888--6171Chr10:22080707..22080731 (25 bp)
GAGGAGTATCTGCAATCACCCAGTA
LOC_Os10g41620
Os.46824.1.S1_x_at--52--31Chr10:22080815..22080839 (25 bp)
ATTGGCGGTCAGTAACATCGAGGAT
LOC_Os10g41620
Os.46824.1.S1_x_at--985--7211Chr10:22080846..22080870 (25 bp)
GTCGACGACTACAGTTTGTCCAGCA
LOC_Os10g41620
Os.46824.1.S1_x_at--151--3611Chr10:22080925..22080949 (25 bp)
CTTGTTATTTTCTCAATCTCCACGA
LOC_Os10g41620
Target Sequence 
GAGAGTCCGGACAATTTCATGAAAACTTCAGCATGCCAATTGAAAGGGCTAGATATAGAGGCGCATCTGCGCAATTGATA
AAAGAGTCAATAGAAGCATCTGAGAGGCTGAAGAAACTTGTTAGCCCTTTTGTATTGAGAAGGACGAAAGAGATGTTAAA
GAATAGCGCCTCTAAACTTGGTACTAAACATGAATTGACTGTGTGGTTGAAGATCTCTGCTGCTCAAGAATATCTTTACA
CCAATCTTATCATGAGCAATGTTTTGGGAGATGAGCCTGGCACACCTTTGGCAGCTTCTCAAGTTGCGAGGAGTATCTGC
AATCACCCAGTAATGGTGATTGGTTCTGACTTTGAACAGAGGGGTGAATCAGAAGAGAAGAAGGATGCTTTAACTGACAT
TATCCGAAAAGGTTTATTGGCGGTCAGTAACATCGAGGATATTGAAGTCGACGACTACAGTTTGTCCAGCAAAGTAGCTT
TTACTTTATATTTGGTGGATAGGCTCATCAAGGAAGATATAAGATCTTGTTATTTTCTCAATCTCCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis