Browse Element(s) Details


Os.46850.1.S1_at

Description gb:AK107812.1
DB_XREF= gi:32993021
TID=Os.46850.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putaive mitochondrial inner membrane protein (OSJNBb0018B10.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F03, full insert sequence.
FL= gb:AK107812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3753011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0015031biological_processprotein transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46850.1.S1_at--145--9331Chr10:19766166..19766190 (25 bp)
TCGCCAAGCGATATGTGCCTGCCAT
LOC_Os10g37530
Os.46850.1.S1_at--439--271Chr10:19766156..19766180 (25 bp)
ATATGTGCCTGCCATATGAGGCTTC
LOC_Os10g37530
Os.46850.1.S1_at--1008--4431Chr10:19766146..19766170 (25 bp)
GCCATATGAGGCTTCGCCGCGGTAT
LOC_Os10g37530
Os.46850.1.S1_at--516--10151Chr10:19766124..19766148 (25 bp)
TATCCCTTGTTCACTCTGATCAAAG
LOC_Os10g37530
Os.46850.1.S1_at--193--7971Chr10:19766100..19766124 (25 bp)
GGATCGAATCAATCAATCCGTCGAA
LOC_Os10g37530
Os.46850.1.S1_at--774--2971Chr10:19766069..19766093 (25 bp)
AATGGTCTTCTGTTTGTTTGTCTGA
LOC_Os10g37530
Os.46850.1.S1_at--1114--6851Chr10:19766054..19766078 (25 bp)
GTTTGTCTGATCTCCAGGTTAGCTC
LOC_Os10g37530
Os.46850.1.S1_at--384--3471Chr10:19766040..19766064 (25 bp)
CAGGTTAGCTCATCGATTTGGGAAT
LOC_Os10g37530
Os.46850.1.S1_at--562--7611Chr10:19766021..19766045 (25 bp)
GGGAATGGTTTAGCCATCTCGAGAA
LOC_Os10g37530
Os.46850.1.S1_at--693--5511Chr10:19765954..19765978 (25 bp)
GAAAATTTTGACCTCTCCTTGCAAT
LOC_Os10g37530
Os.46850.1.S1_at--291--8931Chr10:19765946..19765970 (25 bp)
TGACCTCTCCTTGCAATGTTGTAAC
LOC_Os10g37530
Target Sequence 
TCGCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAAAGGATCGAATCAATC
AATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCC
ATCTCGAGAAAAAAAATATGTGATGTTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTT
GTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis