Browse Element(s) Details


Os.46891.1.S1_at

Description gb:AK063962.1
DB_XREF= gi:32973980
TID=Os.46891.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative homocysteine S-methyltransferase-2 (OSJNBa0075H14.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H11, full insert sequence.
FL= gb:AK103743.1 gb:AK102020.1 gb:AK063962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2863011/11Homocysteine S-methyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28660Os.46678.1.S1_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28660Os.46678.2.S1_x_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0008898molecular_functionhomocysteine S-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46891.1.S1_at--708--7411Chr10:14594711..14594735 (25 bp)
GTGATTCCCTGATAGAGTGTGCCTC
LOC_Os10g28630
Os.46891.1.S1_at--323--1111Chr10:14594726..14594750 (25 bp)
AGTGTGCCTCTATTGCCGATTCATG
LOC_Os10g28630
Os.46891.1.S1_at--700--5011Chr10:14594764..14594788 (25 bp)
GCAGTTGGTATTAATTGCACTCCCC
LOC_Os10g28630
Os.46891.1.S1_at--816--8991Chr10:14594802..14594826 (25 bp)
TGAATTAGTTTTATCCATCCGGAAG
LOC_Os10g28630
Os.46891.1.S1_at--1017--10111Chr10:14595358..14595382 (25 bp)
TATCGAAGGCTCTGCATGGAGTTTA
LOC_Os10g28630
Os.46891.1.S1_at--173--1691Chr10:14595409..14595433 (25 bp)
AGCCAGTTTTTGGACAGAGTCGCTA
LOC_Os10g28630
Os.46891.1.S1_at--95--1351Chr10:14595424..14595448 (25 bp)
AGAGTCGCTAACTCACTCTGTTTGC
LOC_Os10g28630
Os.46891.1.S1_at--1152--8751Chr10:14595442..14595466 (25 bp)
TGTTTGCCCGATGTGACACAGGTCT
LOC_Os10g28630
Os.46891.1.S1_at--255--2131Chr10:14595459..14595483 (25 bp)
ACAGGTCTTATTGGTCAGGTAGTCA
LOC_Os10g28630
Os.46891.1.S1_at--226--6651Chr10:14595551..14595575 (25 bp)
GTTGTTCTTTCATTAGCTTGTACCA
LOC_Os10g28630
Os.46891.1.S1_at--735--4931Chr10:14595566..14595590 (25 bp)
GCTTGTACCAGCACCTTTATTGATG
LOC_Os10g28630
Target Sequence 
GTGATTCCCTGATAGAGTGTGCCTCTATTGCCGATTCATGCAAGGAAGTTGCTGCAGTTGGTATTAATTGCACTCCCCCA
AGATTTATCCATGAATTAGTTTTATCCATCCGGAAGGTGACAAGTAAACCAATATTAATATACCCAAATAGTGGTGAGAG
CTATGATCCTATAAGAAAGGAATGGGTGGAATGCTCAGGGATTTCAAATGAGGATTTTGTTTCATATGTCAAAAAATGGC
ATGAGGCTGGGGCCTCACTGATAGGGGGTTGCTGCAGAACAAGTCCAGATACGATAAGAGGAATATCGAAGGCTCTGCAT
GGAGTTTAGTTGATGGAGATTGAGTAGAGTTGATAGCCAGTTTTTGGACAGAGTCGCTAACTCACTCTGTTTGCCCGATG
TGACACAGGTCTTATTGGTCAGGTAGTCAGATTTCTTATGGAATTTGAATAGCTATTGAGGACAATGATTTAGGAAAAAA
AAAAAACTAATGCTGTGTTGTTCTTTCATTAGCTTGTACCAGCACCTTTATTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis