Browse Element(s) Details


Os.4700.1.S1_at

Description gb:AY324877.1
DB_XREF= gi:34538926
TID=Os.4700.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4700 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative NaH antiporter mRNA, complete cds.
PROD=putative NaH antiporter
FL= gb:AK064004.1 gb:AB021878.1 gb:AK099332.1 gb:AY324877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4710011/11sodium/hydrogen exchanger 3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0009651biological_processresponse to salt stress
GO:0048366biological_processleaf development
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0015081molecular_functionsodium ion transporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4700.1.S1_at--614--3891Chr07:28166039..28166063 (25 bp)
CTGTGTCGATTGCTCTTGCTTACAA
LOC_Os07g47100
Os.4700.1.S1_at--204--3231Chr07:28166212..28166236 (25 bp)
CAAGATCTGGCCATACTCAGCTGCA
LOC_Os07g47100
Os.4700.1.S1_at--1047--9891Chr07:28166225..28166249 (25 bp)
TACTCAGCTGCACGGCAATGCAATA
LOC_Os07g47100
Os.4700.1.S1_at--238--1511Chr07:28166259..28166283 (25 bp)
AGCACCATCACTGTCGTTCTTTTTA
LOC_Os07g47100
Os.4700.1.S1_at--41--1971Chr07:28166268..28166292 (25 bp)
ACTGTCGTTCTTTTTAGCACTATGG
LOC_Os07g47100
Os.4700.1.S1_at--158--8971Chr07:28166972..28166996 (25 bp)
TGACAAGCATGCAAGGTTCTGACCT
LOC_Os07g47100
Os.4700.1.S1_at--563--8931Chr07:28166991..28167015 (25 bp)
TGACCTCGAGAGTACAACCAACATT
LOC_Os07g47100
Os.4700.1.S1_at--609--2651Chr07:28167006..28167030 (25 bp)
AACCAACATTGTGAGGCCTTCCAGC
LOC_Os07g47100
Os.4700.1.S1_at--212--8711Chr07:28167063..28167087 (25 bp)
TGTCCACTACTACTGGCGCAAGTTC
LOC_Os07g47100
Os.4700.1.S1_at--708--4151Chr07:28167093..28167117 (25 bp)
CGCGCTGATGCGACCGATGTTTGGC
LOC_Os07g47100
Os.4700.1.S1_at--1143--7951Chr07:28167145..28167169 (25 bp)
GGATCACCAACCGAGCAGAGCCATG
LOC_Os07g47100
Target Sequence 
CTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACC
AGCACCATCACTGTCGTTCTTTTTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGC
CTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCTCCTCTCCTGACAAGCATGCAAGGTTCTG
ACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTAC
TACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACC
AACCGAGCAGAGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis