Browse Element(s) Details


Os.47086.1.S1_at

Description gb:BQ909188
DB_XREF= gi:22307966
DB_XREF=T022E12
CLONE=T022E12
TID=Os.47086.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47086 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g321401/11hypothetical protein
LOC_Os07g400101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g498201/11hypothetical protein
LOC_Os04g516001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47086.1.S1_at--191--9511Chr10:21664655..21664679 (25 bp)
TCTCTCCTCCTCAACCAGAAATTAT
NONE
Os.47086.1.S1_at--542--10194Chr08:19243762..19243817 (25 bp)
TATTATTTTAATCGGTGCAGTGTCT
NONE
Os.47086.1.S1_at--583--3051Chr10:21664624..21664648 (25 bp)
AATCGGTGCAGTGTCTACTGTCAAA
NONE
Os.47086.1.S1_at--414--1111Chr10:21664615..21664639 (25 bp)
AGTGTCTACTGTCAAATTACCACGT
NONE
Os.47086.1.S1_at--320--8811Chr10:21664567..21664591 (25 bp)
TGAGTTTAGGCAGTGTCGTAAGGCT
NONE
Os.47086.1.S1_at--405--891Chr10:21664560..21664584 (25 bp)
AGGCAGTGTCGTAAGGCTAAAACCA
NONE
Os.47086.1.S1_at--129--7171Chr10:21664553..21664577 (25 bp)
GTCGTAAGGCTAAAACCACACGTAG
NONE
Os.47086.1.S1_at--388--97939Chr11:4323028..4323066 (25 bp)
TAAAACCACACGTAGCAAAATTTGC
NONE
Os.47086.1.S1_at--759--10691Chr10:21664522..21664546 (25 bp)
TTGCCTCATCTATATGAGACCCTGC
NONE
Os.47086.1.S1_at--681--3751Chr10:21664518..21664542 (25 bp)
CTCATCTATATGAGACCCTGCAGGG
NONE
Os.47086.1.S1_at--73--6996Chr04:30351162..30351265 (25 bp)
GTGACTACTCCCTCCATTAAAAAGA
LOC_Os04g51600
Target Sequence 
TCTCTCCTCCTCAACCAGAAATTATTATTTTAATCGGTGCAGTGTCTACTGTCAAATTACCACGTTTATGGAGTGTTTTC
CCCAAANGTGAGTTTAGGCAGTGTCGTAAGGCTAAAACCACACGTAGCAAAATTTGCCTCATCTATATGAGACCCTGCAG
GGGAAAAGTGACTACTCCCTCCATTAAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis