Browse Element(s) Details


Os.47303.1.S1_s_at

Description gb:AY444338.1
DB_XREF= gi:38261492
TID=Os.47303.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47303 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
PROD=cytosolic NADP malic enzyme
FL= gb:AK073858.1 gb:AY444338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5403011/11NADP-dependent malic enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47303.1.S1_s_at--795--5611Chr01:31407225..31407249 (25 bp)
GACAAGCTTTTCGTGCCTGCACAGG
LOC_Os01g54030
Os.47303.1.S1_s_at--747--10171Chr01:31407408..31407432 (25 bp)
TATATATTCCCAGGATTTGGCCTAG
LOC_Os01g54030
Os.47303.1.S1_s_at--109--10231Chr01:31407423..31407447 (25 bp)
TTTGGCCTAGGCGTAGTGATTTCAG
LOC_Os01g54030
Os.47303.1.S1_s_at--771--5291Chr01:31407606..31407630 (25 bp)
GAAGGCTTAGCTGACCAGGTGACCC
LOC_Os01g54030
Os.47303.1.S1_s_at--810--1031Chr01:31407622..31407646 (25 bp)
AGGTGACCCCAGAGCATGTTGACAA
LOC_Os01g54030
Os.47303.1.S1_s_at--675--1651Chr01:31407701..31407725 (25 bp)
AGCCCGCGTTGCTGCAAAAGCCTAT
LOC_Os01g54030
Os.47303.1.S1_s_at--258--9311Chr01:31407840..31407864 (25 bp)
TCCCTCGCCCAAAAGACTTGGTGAA
LOC_Os01g54030
Os.47303.1.S1_s_at--1143--7391Chr01:31407915..31407939 (25 bp)
GTGATGCTCACCTTAGTGTACAGCT
LOC_Os01g54030
Os.47303.1.S1_s_at--929--3271Chr01:31407971..31407995 (25 bp)
CAGTAATAATTTGCGGTTGGACCTA
LOC_Os01g54030
Os.47303.1.S1_s_at--1105--6591Chr01:31407986..31408010 (25 bp)
GTTGGACCTATATCGTACGGCAGTA
LOC_Os01g54030
Os.47303.1.S1_s_at--430--8271Chr01:31408004..31408028 (25 bp)
GGCAGTAGCATTTTATCCCTGAACT
LOC_Os01g54030
Target Sequence 
GACAAGCTTTTCGTGCCTGCACAGGCAAACAATGCATATATATTCCCAGGATTTGGCCTAGGCGTAGTGATTTCAGGAGC
GATAAGGGTGAAAGATGAAATGATCCTTGCTGCTGCTGAAGGCTTAGCTGACCAGGTGACCCCAGAGCATGTTGACAAAG
GCCTTATTTATCCACCCTTTTCCTGCATCAGGAAGATATCAGCCAACATCGCAGCCCGCGTTGCTGCAAAAGCCTATGAC
CTTGGATTGGCTAGCCATCTCCCTCGCCCAAAAGACTTGGTGAAGTACGCTGAGAGCTGCATGTACAGCCCCATTTACCG
TTCTTATAGATGAAGTGATGCTCACCTTAGTGTACAGCTTCATTTGGCTACAGCATGCTNTCTTGTATTACAGTAATAAT
TTGCGGTTGGACCTATATCGTACGGCAGTAGCATTTTATCCCTGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47303.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis