Browse Element(s) Details


Os.47329.1.A1_at

Description gb:AK105188.1
DB_XREF= gi:32990397
TID=Os.47329.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H08, full insert sequence.
FL= gb:AK105188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g119001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein
LOC_Os05g11850Os.21343.1.S1_at11/115+6731537..6735668glycoside hydrolase family 47 protein, putative, expressed
LOC_Os05g11860OsAffx.26842.1.S1_at11/115+6740034..6740816Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein
LOC_Os05g11910Os.7727.1.S1_at10/115+6766991..6770735GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g11920OsAffx.14647.1.S1_at9/115+6771238..6772094hypothetical protein
LOC_Os05g11930OsAffx.14648.1.S1_at11/115+6772668..6773045hypothetical protein
LOC_Os05g11940OsAffx.442.1.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_x_at5/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_s_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.2.S1_x_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.4.S1_at4/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.24587.1.S1_x_at3/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.30226.1.S1_x_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11940OsAffx.442.1.S1_at2/115+6773378..6777031retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47329.1.A1_at--518--6451Chr05:6753264..6753288 (25 bp)
GATCAAGAGTTGCATCCCAAAATAA
NONE
Os.47329.1.A1_at--1134--351Chr05:6753289..6753313 (25 bp)
ATAATCCACCGCAAAAGCTACAGGC
NONE
Os.47329.1.A1_at--384--7851Chr05:6753325..6753349 (25 bp)
GGTAGCTTCGCTATAGCCCATCAAA
NONE
Os.47329.1.A1_at--679--9331Chr05:6753396..6753420 (25 bp)
TCGACGACGATTCACCGGCCATGTG
NONE
Os.47329.1.A1_at--1093--7951Chr05:6753546..6753692 (25 bp)
GGATCATCGGGCTGCCGATCTCGTG
LOC_Os05g11900
Os.47329.1.A1_at--106--1771Chr05:6753781..6753805 (25 bp)
ACCTCCAAGATACCATGCTAGCTAT
NONE
Os.47329.1.A1_at--277--1571Chr05:6753800..6753824 (25 bp)
AGCTATAGCTTCTTGATTTGCTCTA
NONE
Os.47329.1.A1_at--251--6531Chr05:6753814..6753838 (25 bp)
GATTTGCTCTACCATTTGATCAGAT
NONE
Os.47329.1.A1_at--559--10431Chr05:6753894..6753918 (25 bp)
TTATGCATATGTACTCTGGCTTGGA
NONE
Os.47329.1.A1_at--1073--7131Chr05:6753933..6753957 (25 bp)
GTCATTCCAATCGAGATTCATTCGG
NONE
Os.47329.1.A1_at--550--2811Chr05:6753962..6753986 (25 bp)
AAGATATACTCTGTGGTGCTGGTTC
NONE
Target Sequence 
GATCAAGAGTTGCATCCCAAAATAAATAATCCACCGCAAAAGCTACAGGCGCCANCCTCCAGGTAGCTTCGCTATAGCCC
ATCAAACAAGCAAGAAAGGGGNAGAGAAGGGAAGGAGAGNTCGTCGTCGCCGTCGACGACGATTCACCGGCCATGTGCTG
CTGCTGCGGCGGCGGCGGCGACGGCGACGGCGACGGCTGCAAGTGCCGNCCGCTGGGGTGNCTGCTGGGTCTGCCNTTCG
CGCTGCTCGCCGTCCTCGTCTCCATCGTCGGCGCCATCATCTGGATCATCGGGCTGCCGATCTCGTGCATCTGCCCGTGC
TGCCTGTGCGTGACGCTGGTGCTGGAGGCGGCGGTGGAGCTCATCAAGGCGCCGCTCCATGTCATGACCTGGTTCACCTC
CAAGATACCATGCTAGCTATAGCTTCTTGATTTGCTCTACCATTTGATCAGATATAAACAGAATGATCAGTAACTGATCA
GTAAGTATACCGATTATTTATTATTTATTTATGCATATGTACTCTGGCTTGGAGATATGATTAATTTGTCATTCCAATCG
AGATTCATTCGGTGAAAAGATATACTCTGTGGTGCTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47329.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis