Browse Element(s) Details


Os.47339.1.S1_x_at

Description gb:AK064352.1
DB_XREF= gi:32974370
TID=Os.47339.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A09, full insert sequence.
FL= gb:AK064352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3235010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed
LOC_Os05g32380OsAffx.14915.1.S1_at11/115+18803258..18804694lipase class 3 family protein, putative
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47339.1.S1_x_at--751--2551NONE
AACTGAGGAGGCTGCACAATGCTAC
NONE
Os.47339.1.S1_x_at--706--6131Chr05:18782682..18782706 (25 bp)
GAGGGAGACTGTGTCCGTATTCTTC
LOC_Os05g32350
Os.47339.1.S1_x_at--421--7251Chr05:18782694..18782718 (25 bp)
GTCCGTATTCTTCCATGCAATCATG
LOC_Os05g32350
Os.47339.1.S1_x_at--604--6471Chr05:18783373..18783696 (25 bp)
GATACACAGGGTTTGTCCACTTTGT
LOC_Os05g32350
Os.47339.1.S1_x_at--737--3991Chr05:18783697..18783721 (25 bp)
CGTGGTGATGTCTGCAGATCCAATG
LOC_Os05g32350
Os.47339.1.S1_x_at--585--2432Chr05:18783736..18783760 (25 bp)
AAAACCACATGATCTTCTCTTCTGT
LOC_Os05g32350
Os.47339.1.S1_x_at--133--2071Chr05:18783780..18783804 (25 bp)
ACATTGTTTCTGATCCAATCCCAAC
LOC_Os05g32350
Os.47339.1.S1_x_at--1131--7051Chr05:18783832..18783856 (25 bp)
GTAATTTCACATATTCTTTCCCTCC
LOC_Os05g32350
Os.47339.1.S1_x_at--286--10631Chr05:18783857..18783881 (25 bp)
TTCGATCAGGACAACTCAGAGTGCT
LOC_Os05g32350
Os.47339.1.S1_x_at--745--6111Chr05:18783875..18783899 (25 bp)
GAGTGCTCCTTCATGTGGTGGCAAA
LOC_Os05g32350
Os.47339.1.S1_x_at--665--2251Chr05:18783897..18783921 (25 bp)
AAATTTGCATCGCAGTCATCCCTGT
LOC_Os05g32350
Target Sequence 
AACTGAGGAGGCTGCACAATGCTACATTNGCCTTGTTGAATATNCCGAGGGAGACTGTGTCCGTATTCTTCCATGCAATC
ATGAATTTCATCTAACATGCGTAGATAAATGGTTGAAAGAGATACACAGGGTTTGTCCACTTTGTCGTGGTGATGTCTGC
AGATCCAATGCATCAGGCATTGGAAAAACCACATGATCTTCTCTTCTGTGAGAAAAATGGAGCTTNTGACATTGTTTCTG
ATCCAATCCCAACAGAATTTGTAATACACGTGTTTCAGGTGTAATTTCACATATTCTTTCCCTCCTTCGATCAGGACAAC
TCAGAGTGCTCCTTCATGTGGTGGCAAATTTGCATCGCAGTCATCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47339.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis