Browse Element(s) Details


Os.4746.2.S1_x_at

Description gb:AJ417520.1
DB_XREF= gi:37776906
TID=Os.4746.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E05, full insert sequence
DEF=Oryza sativa partial mRNA for ribosomal protein L31 (xd5 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4866011/1160S ribosomal protein L31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4746.2.S1_x_at--642--9311Chr02:29789868..29789892 (25 bp)
TCCCTGCAGAGGGTCTCAAGGGTTT
LOC_Os02g48660
Os.4746.2.S1_x_at--963--2391Chr02:29789814..29789838 (25 bp)
AAACTTTTCATTGTTATCTGTCAGT
LOC_Os02g48660
Os.4746.2.S1_x_at--526--471Chr02:29789799..29789823 (25 bp)
ATCTGTCAGTTAGCGCTTAGTGCAT
LOC_Os02g48660
Os.4746.2.S1_x_at--679--7331Chr02:29789780..29789804 (25 bp)
GTGCATATTTCCATGATTCCAGTCA
LOC_Os02g48660
Os.4746.2.S1_x_at--413--6591Chr02:29789766..29789790 (25 bp)
GATTCCAGTCACTATGCTGAGAGCA
LOC_Os02g48660
Os.4746.2.S1_x_at--13--8211Chr02:29789736..29789760 (25 bp)
GGAAGTCTTGCTTTAGCGTTTTGTT
LOC_Os02g48660
Os.4746.2.S1_x_at--1084--4631Chr02:29789721..29789745 (25 bp)
GCGTTTTGTTATCTACTGTTGATGA
LOC_Os02g48660
Os.4746.2.S1_x_at--756--6651Chr02:29789704..29789728 (25 bp)
GTTGATGATTCAAGACTGCATTTTC
LOC_Os02g48660
Os.4746.2.S1_x_at--754--1971Chr02:29789690..29789714 (25 bp)
ACTGCATTTTCTTAAGCGCTTGGAA
LOC_Os02g48660
Os.4746.2.S1_x_at--406--4131Chr02:29789674..29789698 (25 bp)
CGCTTGGAATTTTGACATGTTTGTC
LOC_Os02g48660
Os.4746.2.S1_x_at--953--311Chr02:29789634..29789658 (25 bp)
ATACTCCATGCTATCGTGCTGTGAA
LOC_Os02g48660
Target Sequence 
TCCCTGCAGAGGGTCTCAAGGGTTTGGGAACCAAGGTTGTTGAGGATGAGGAGTAAACTTTTCATTGTTATCTGTCAGTT
AGCGCTTAGTGCATATTTCCATGATTCCAGTCACTATGCTGAGAGCAAATTTGGAAGTCTTGCTTTAGCGTTTTGTTATC
TACTGTTGATGATTCAAGACTGCATTTTCTTAAGCGCTTGGAATTTTGACATGTTTGTCAACCTTTTGGGATATATACTC
CATGCTATCGTGCTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4746.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis