Browse Element(s) Details


Os.47560.1.S1_at

Description gb:AK063572.1
DB_XREF= gi:32973590
TID=Os.47560.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G08, full insert sequence.
FL= gb:AK063572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0666011/11Actin-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06680OsAffx.22699.1.S1_x_at2/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.28610.2.S1_x_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.31700.1.S1_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06690OsAffx.29396.1.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06690OsAffx.30787.3.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47560.1.S1_at--2--8191Chr12:3231494..3231518 (25 bp)
GGAAGGATCTGTACGGCAATGTCGT
LOC_Os12g06660
Os.47560.1.S1_at--632--8511Chr12:3231460..3231484 (25 bp)
TGGATCGACCATGTTCCCCGGGATC
LOC_Os12g06660
Os.47560.1.S1_at--316--7931Chr12:3231344..3231368 (25 bp)
GGATTGGTGGATCCATCCTTGCCTC
LOC_Os12g06660
Os.47560.1.S1_at--538--5231Chr12:3230829..3230853 (25 bp)
GAATATGACGAATCAGGCCCAGCGA
LOC_Os12g06660
Os.47560.1.S1_at--963--2851Chr12:3230793..3230817 (25 bp)
AAGTGCTTCTAAGTTCTTGGTCTTA
LOC_Os12g06660
Os.47560.1.S1_at--906--7811Chr12:3230775..3230799 (25 bp)
GGTCTTATTTATTCTCAAGTTCTTG
LOC_Os12g06660
Os.47560.1.S1_at--1117--1211Chr12:3230758..3230782 (25 bp)
AGTTCTTGCCGGGTTTCCAATGAGA
LOC_Os12g06660
Os.47560.1.S1_at--287--51Chr12:3230730..3230754 (25 bp)
ATTGTTGAGTTTGTCTGTTTGAGCA
LOC_Os12g06660
Os.47560.1.S1_at--85--311Chr12:3230695..3230719 (25 bp)
ATACATGGCCATATTAGAGTTCCTG
LOC_Os12g06660
Os.47560.1.S1_at--948--6051Chr12:3230679..3230703 (25 bp)
GAGTTCCTGTTGATGCCAGGTTTGT
LOC_Os12g06660
Os.47560.1.S1_at--201--3571Chr12:3230564..3230588 (25 bp)
CATAATTCATCTGCGTGAGTTGTAA
LOC_Os12g06660
Target Sequence 
GGAAGGATCTGTACGGCAATGTCGTNCTGAGTGNTGGATCGACCATGTTCCCCGGGATCGCGGACCGGATGAGCAAGGAG
ATCACCGCGCTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGNCGCCTCCGGAGAGGAAGTACAGTGTCTGGATTGGTGG
ATCCATCCTTGCCTCCCTTAGCACCTTCCAACAGATGTGGATCTCCAAGGCNGAATATGACGAATCAGGCCCAGCGATTG
TCCACCGGAAGTGCTTCTAAGTTCTTGGTCTTATTTATTCTCAAGTTCTTGCCGGGTTTCCAATGAGATATATTGTTGAG
TTTGTCTGTTTGAGCAGTGNTGAATCATACATGGCCATATTAGAGTTCCTGTTGATGCCAGGTTTGTNGCTANTATNGAG
GAATNNGNACTATCCACCACTATCTNNNGNNATAGNAATTGCGTCACCTGAGCCACATNNTCATTCTTCTGTATATTCAT
AATTCATCTGCGTGAGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis