Browse Element(s) Details


Os.47752.1.S1_at

Description gb:BX929186
DB_XREF= gi:41884355
DB_XREF=BX929186
CLONE=p726e10p5
TID=Os.47752.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0036M16.16 (OSJNBa0036M16.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g333909/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33370OsAffx.22295.2.S1_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.2.S1_x_at11/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33370OsAffx.22295.1.S1_at7/117+19942549..19949361IQ calmodulin-binding motif family protein, expressed
LOC_Os07g33380OsAffx.28728.1.S1_at11/117+19955539..19956483hypothetical protein
LOC_Os07g33390Os.47752.1.S1_at9/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33390OsAffx.20433.1.S1_x_at2/117+19960426..19962128ATPase, AAA family protein, expressed
LOC_Os07g33400Os.23959.1.A1_x_at10/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.23959.1.A1_at5/117+19963975..19968222hypothetical protein
LOC_Os07g33400Os.55693.1.S1_at1/117+19963975..19968222hypothetical protein
LOC_Os07g33410OsAffx.1381.2.A1_at6/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33410OsAffx.20433.1.S1_x_at1/117+19968831..19972476ATPase, AAA family protein
LOC_Os07g33420Os.32947.2.S1_at11/117+19975950..19977736Cytochrome P450 family protein
LOC_Os07g33430NANA7+19978918..19979710hypothetical protein
LOC_Os07g33440Os.26830.1.S1_at11/117+19984018..19985974Cytochrome P450 family protein, expressed
LOC_Os07g33440Os.20627.3.S1_x_at2/117+19984018..19985974Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47752.1.S1_at--1048--1351Chr07:19961484..19961605 (25 bp)
AGAGAAGAGACTGACATTGTCCGGG
LOC_Os07g33390
Os.47752.1.S1_at--473--791Chr07:19961957..19961981 (25 bp)
ATGTGTGAAGCAGGCAAGTAGCGTC
LOC_Os07g33390
Os.47752.1.S1_at--405--3491Chr07:19961967..19961991 (25 bp)
CAGGCAAGTAGCGTCATAGCATCAA
LOC_Os07g33390
Os.47752.1.S1_at--464--6971Chr07:19961974..19961998 (25 bp)
GTAGCGTCATAGCATCAAGTATTCA
LOC_Os07g33390
Os.47752.1.S1_at--152--2811Chr07:19961998..19962022 (25 bp)
AAGATTCAAGAACTGTCAGGATTGA
LOC_Os07g33390
Os.47752.1.S1_at--929--9631Chr07:19962013..19962037 (25 bp)
TCAGGATTGAAGTAGGATCAAGCCA
LOC_Os07g33390
Os.47752.1.S1_at--850--6451Chr07:19962028..19962052 (25 bp)
GATCAAGCCATTTTGTGTTCCCCAA
LOC_Os07g33390
Os.47752.1.S1_at--645--8791Chr07:19962043..19962067 (25 bp)
TGTTCCCCAAGTCCAATCCTTGAGA
LOC_Os07g33390
Os.47752.1.S1_at--50--7271Chr07:19962053..19962077 (25 bp)
GTCCAATCCTTGAGACGATTCAGTT
LOC_Os07g33390
Os.47752.1.S1_at--562--5991NONE
GAGACGATTCAGTTCTTGTTCCTGA
NONE
Os.47752.1.S1_at--1116--4031NONE
CGATTCAGTTCTTGTTCCTGATTTC
NONE
Target Sequence 
AGAGAAGAGACTGACATTGTCCGGGCTGCTCAACTTCATCGACGGCTTGTGGTCGACGAGCGGCGAGGAGAGGGTCATCG
TCTTCACCACCAACTACAAGGATCGCCTCGACGCGGCGCTGCTCNGNCNGGGGAGGATGGACATGCACGTCTACATGGGC
TACTGCGGCTGGGACGCNTTCAAGACGCTCGCCCACAACTACTTCCTCGTCGACGACCACCCGCTGTTCCCGGAGATACG
GGCGCTGCTCGCCGGCGTGGAGGCGACGCCGGCCGAGGTGTCGGAGATGCTGCTGCGCAGCGANGACGCCGACGCCGCGC
TCNAGTGGCCTCGTCGAGTTCCTCGAGGAGAAGAAGGAGAAGAAGAAGAAGNNNNNANGGCNCATGTGTGAAGCAGGCAA
GTAGCGTCATAGCATCAAGTATTCAAGATTCAAGAACTGTCAGGATTGAAGTAGGATCAAGCCATTTTGTGTTCCCCAAG
TCCAATCCTTGAGACGATTCAGTTCTTGTTCCTGATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis