Browse Element(s) Details


Os.47809.1.S1_s_at

Description gb:AB112808.1
DB_XREF= gi:46091158
GEN=Rf-1A
TID=Os.47809.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47809 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) Rf-1A mRNA for PPR protein, complete cds, cultivar: MTC-10R.
PROD=PPR protein
FL= gb:AB112808.1 gb:AB110016.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3543611/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47809.1.S1_s_at--412--2872Chr10:18623555..18623579 (25 bp)
AAGGATTTGTTTGTTGCTTTCTCGT
LOC_Os10g35436
Os.47809.1.S1_s_at--848--9072Chr10:18623569..18623593 (25 bp)
TGCTTTCTCGTCTAACGGTTTAGTG
LOC_Os10g35436
Os.47809.1.S1_s_at--846--7852Chr10:18623585..18623609 (25 bp)
GGTTTAGTGCCGAATTATTGGACGT
LOC_Os10g35436
Os.47809.1.S1_s_at--660--9892Chr10:18623589..18623613 (25 bp)
TAGTGCCGAATTATTGGACGTACAG
LOC_Os10g35436
Os.47809.1.S1_s_at--210--5212Chr10:18623654..18623678 (25 bp)
GAATTGGATCAACTCTTTCTTTCAA
LOC_Os10g35436
Os.47809.1.S1_s_at--881--7952Chr10:18623659..18623683 (25 bp)
GGATCAACTCTTTCTTTCAATGGAG
LOC_Os10g35436
Os.47809.1.S1_s_at--933--6172Chr10:18623681..18623705 (25 bp)
GAGGACAATGGCTGTACTGTTGACT
LOC_Os10g35436
Os.47809.1.S1_s_at--49--2972Chr10:18623687..18623711 (25 bp)
AATGGCTGTACTGTTGACTCTGGCA
LOC_Os10g35436
Os.47809.1.S1_s_at--114--7012Chr10:18623694..18623718 (25 bp)
GTACTGTTGACTCTGGCATGCTAAA
LOC_Os10g35436
Os.47809.1.S1_s_at--1116--6652Chr10:18623699..18623723 (25 bp)
GTTGACTCTGGCATGCTAAATTTCA
LOC_Os10g35436
Os.47809.1.S1_s_at--980--10532Chr10:18623720..18623744 (25 bp)
TTCATTGTTAGGGAACTGTTGCAGA
LOC_Os10g35436
Target Sequence 
AAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTAT
AGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTTTCAATGGAGGACAATGGCTGTACTGTTGACTCTGGCATGC
TAAATTTCATTGTTAGGGAACTGTTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47809.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis