Browse Element(s) Details


Os.47961.1.S1_at

Description gb:AK066090.1
DB_XREF= gi:32976108
TID=Os.47961.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058K24, full insert sequence.
FL= gb:AK066090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3899011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47961.1.S1_at--1082--4871Chr01:22247596..22247620 (25 bp)
GCTTTAGCTGGTCTTTTTGGGCAAA
LOC_Os01g38990
Os.47961.1.S1_at--133--9991Chr01:22247600..22247624 (25 bp)
TAGCTGGTCTTTTTGGGCAAACCCT
LOC_Os01g38990
Os.47961.1.S1_at--572--4711Chr01:22247602..22247626 (25 bp)
GCTGGTCTTTTTGGGCAAACCCTCA
LOC_Os01g38990
Os.47961.1.S1_at--649--10211Chr01:22247611..22247635 (25 bp)
TTTGGGCAAACCCTCACTTATCCAC
LOC_Os01g38990
Os.47961.1.S1_at--427--7591Chr01:22247614..22247638 (25 bp)
GGGCAAACCCTCACTTATCCACTGG
LOC_Os01g38990
Os.47961.1.S1_at--956--2351Chr01:22247618..22247642 (25 bp)
AAACCCTCACTTATCCACTGGATGT
LOC_Os01g38990
Os.47961.1.S1_at--510--1811Chr01:22247620..22247644 (25 bp)
ACCCTCACTTATCCACTGGATGTTG
LOC_Os01g38990
Os.47961.1.S1_at--333--3671Chr01:22247627..22247651 (25 bp)
CTTATCCACTGGATGTTGTCCGAAG
LOC_Os01g38990
Os.47961.1.S1_at--1035--10131Chr01:22247629..22247653 (25 bp)
TATCCACTGGATGTTGTCCGAAGAC
LOC_Os01g38990
Os.47961.1.S1_at--886--571Chr01:22247630..22247654 (25 bp)
ATCCACTGGATGTTGTCCGAAGACA
LOC_Os01g38990
Os.47961.1.S1_at--1028--4351Chr01:22247632..22247656 (25 bp)
CCACTGGATGTTGTCCGAAGACAGA
LOC_Os01g38990
Target Sequence 
GCTTTAGCTGGTCTTTTTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis