Browse Element(s) Details


Os.48332.1.A1_s_at

Description gb:CR281103
DB_XREF= gi:44667669
DB_XREF=CR281103
CLONE=y831e04p3
TID=Os.48332.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48332 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3901011/11lactose permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48332.1.A1_s_at--813--5611Chr07:23394770..23394794 (25 bp)
GACACTCGGCGAAGACCTTTAGTTG
LOC_Os07g39010
Os.48332.1.A1_s_at--344--10451Chr07:23394788..23394812 (25 bp)
TTAGTTGAACCTCTTCTCGCATAAC
LOC_Os07g39010
Os.48332.1.A1_s_at--273--771Chr07:23394846..23394870 (25 bp)
ATGTCCAACGGCCAATGACTCCACT
LOC_Os07g39010
Os.48332.1.A1_s_at--967--891Chr07:23394876..23394900 (25 bp)
AGGCTGGAGCTATTAACAACAGTAC
LOC_Os07g39010
Os.48332.1.A1_s_at--235--931Chr07:23394917..23394941 (25 bp)
AGGAAAGAAACTCGGACATTGTCAA
LOC_Os07g39010
Os.48332.1.A1_s_at--497--9731Chr07:23394938..23394962 (25 bp)
TCAATTCATTTTGACTTGGTCTGAA
LOC_Os07g39010
Os.48332.1.A1_s_at--539--5631Chr07:23394984..23395008 (25 bp)
GACACAGTGAAAGGTACTCAGCAAC
LOC_Os07g39010
Os.48332.1.A1_s_at--519--3411Chr07:23395002..23395026 (25 bp)
CAGCAACGAGTTGAGTATGTACCAA
LOC_Os07g39010
Os.48332.1.A1_s_at--128--8571Chr07:23395049..23395073 (25 bp)
TGTGTAAGTTAATCCAAAATCCCCT
LOC_Os07g39010
Os.48332.1.A1_s_at--155--551Chr07:23395067..23395091 (25 bp)
ATCCCCTTACAAATGTAGCCTAGCC
LOC_Os07g39010
Os.48332.1.A1_s_at--684--9991Chr07:23395082..23395106 (25 bp)
TAGCCTAGCCGCATTGTTCACAAGA
LOC_Os07g39010
Target Sequence 
GACACTCGGCGAAGACCTTTAGTTGAACCTCTTCTCGCATAACTCTGCTGTTAGCACTTCCATNGCAACTGTANATATGT
CCAACGGCCAATGACTCCACTGCTGGAGGCTGGAGCTATTAACAACAGTACAGTTATACNACTCGNAAGGAAAGAAACTC
GGACATTGTCAATTCATTTTGACTTGGTCTGAAATTCTGAATTAAGTTATAGATGACACAGTGAAAGGTACTCAGCAACG
AGTTGAGTATGTACCAAAAGTAGCATGGGANNANAATCCTGTGTAAGTTAATCCAAAATCCCCTTACAAATGTAGCCTAG
CCGCATTGTTCACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48332.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis