Browse Element(s) Details


Os.48352.1.A1_at

Description gb:CR281473
DB_XREF= gi:44668039
DB_XREF=CR281473
CLONE=y681d03p3
TID=Os.48352.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48352 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g606704/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48352.1.A1_at--472--8771NONE
TGTATTTTGCCGGTACATGCATTGA
NONE
Os.48352.1.A1_at--1096--10691NONE
TTGCCGGTACATGCATTGATGGATT
NONE
Os.48352.1.A1_at--105--3611NONE
CATTGATGGATTGGACTGGTGCTTT
NONE
Os.48352.1.A1_at--354--7771NONE
GGTGCTTTGTGGGTAGTGATTCTAA
NONE
Os.48352.1.A1_at--1137--9515Chr10:10487856..10487880 (25 bp)
TCTCTCATTTCTTAAATGTGTTTAG
NONE
Os.48352.1.A1_at--538--771NONE
ATGTGTTTAGTATTTATGAGCCCGA
NONE
Os.48352.1.A1_at--43--10431NONE
TTAGTATTTATGAGCCCGATACAAA
NONE
Os.48352.1.A1_at--157--2876Chr10:10487908..10487932 (25 bp)
AAGGGCCGTTTATTCGGATTGTGAG
NONE
Os.48352.1.A1_at--440--10416Chr10:10487917..10487941 (25 bp)
TTATTCGGATTGTGAGACGCATTAA
NONE
Os.48352.1.A1_at--76--3976Chr10:10487922..10487946 (25 bp)
CGGATTGTGAGACGCATTAAAATGC
NONE
Os.48352.1.A1_at--351--10494Chr10:10487938..10487962 (25 bp)
TTAAAATGCAATTTGCGCCCCGAAT
NONE
Target Sequence 
TGTATTTTGCCGGTACATGCATTGATGGATTGGACTGGTGCTTTGTGGGTAGTGATTCTAAATTCTCTCATTTCTTAAAT
GTGTTTAGTATTTATGAGCCCGATACAAAATAAAAAAGGGCCGTTTATTCGGATTGTGAGACGCATTAAAATGCAATTTG
CGCCCCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48352.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis