Browse Element(s) Details


Os.48354.1.S1_at

Description gb:AK120494.1
DB_XREF= gi:37990117
TID=Os.48354.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119O06, full insert sequence.
FL= gb:AK120494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48354.1.S1_at--1019--7871Chr02:32066522..32066546 (25 bp)
GGTTTATTGCCCATCAGAGTTTGGA
LOC_Os02g52410
Os.48354.1.S1_at--1069--6071Chr02:32066506..32066530 (25 bp)
GAGTTTGGATGTTTCTCTCCAGATA
LOC_Os02g52410
Os.48354.1.S1_at--1000--7111Chr02:32065704..32065728 (25 bp)
GTCAGGTGTCATCAGCGCATGAGCT
LOC_Os02g52410
Os.48354.1.S1_at--244--1651Chr02:32065691..32065715 (25 bp)
AGCGCATGAGCTGTTAGTCCCCAGA
LOC_Os02g52410
Os.48354.1.S1_at--1087--1131Chr02:32065676..32065700 (25 bp)
AGTCCCCAGAGGCTCATCTGAGATT
LOC_Os02g52410
Os.48354.1.S1_at--131--5151Chr02:32065618..32065642 (25 bp)
GCAACTTCATATACCGATTCTTCCT
LOC_Os02g52410
Os.48354.1.S1_at--849--10691Chr02:32065578..32065602 (25 bp)
TTGCCATGATACGTTTCTCTTTCTC
LOC_Os02g52410
Os.48354.1.S1_at--27--9531Chr02:32065563..32065587 (25 bp)
TCTCTTTCTCTTGTCTTGGGTATAT
LOC_Os02g52410
Os.48354.1.S1_at--785--5571Chr02:32065418..32065442 (25 bp)
GAAATGATGGTGCTCTTGCACATTT
LOC_Os02g52410
Os.48354.1.S1_at--84--10771Chr02:32065378..32065402 (25 bp)
TTGTCTCTGATCACGAACTTTCCTA
LOC_Os02g52410
Os.48354.1.S1_at--173--11Chr02:32065361..32065385 (25 bp)
CTTTCCTAAAGCACCATTCGGATTA
LOC_Os02g52410
Target Sequence 
GGTTTATTGCCCATCAGAGTTTGGATGTTTCTCTCCAGATAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGG
CTGACCACCCTAAACTCAACTTCAAAGACAAGTATTCCGAGTCATACAGAGATTCTCATCCCACTGCCCCTGTCGTTGTG
CCCTGGATGTCAGGTGTCATCAGCGCATGAGCTGTTAGTCCCCAGAGGCTCATCTGAGATTGGGAGATTTGTACCGATGA
AAAACTTAACCAAAGCAACTTCATATACCGATTCTTCCTCGTTTTTTTTTTCTTTTGCCATGATACGTTTCTCTTTCTCT
TGTCTTGGGTATATACGAATATGATGTAAACCTTAGATTAGTCGTTCTGATAGCAAAAGGTTCATTTGAGGGAGGCTTAN
NNNNNNGCCAAGGGAATGTGAGTAGACTGATTAAATACAATGGTTCCATCAAGAGAAATGATGGTGCTCTTGCACATTTT
CCGCTCCNNNNNNNTTGTCTCTGATCACGAACTTTCCTAAAGCACCATTCGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis