Browse Element(s) Details


Os.48459.1.A1_at

Description gb:CR283190
DB_XREF= gi:44669756
DB_XREF=CR283190
CLONE=y798a12p3
TID=Os.48459.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48459 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564310.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g067405/11SNELIPTRC, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0016192biological_processvesicle-mediated transport
GO:0010008cellular_componentendosome membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005484molecular_functionSNAP receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48459.1.A1_at--757--4431NONE
GCCTTGACATGGAAACTACGACCTA
NONE
Os.48459.1.A1_at--686--5831NONE
GACCTATAGGCTCGACTTTGTGCAG
NONE
Os.48459.1.A1_at--1078--10831NONE
TTGGTGTCAGTTAACATTCTTGTTG
NONE
Os.48459.1.A1_at--209--3611Chr11:3289348..3289372 (25 bp)
CATTGTGTATTCTTATCGGGTGCAT
LOC_Os11g06740
Os.48459.1.A1_at--1097--491Chr11:3289362..3289386 (25 bp)
ATCGGGTGCATAGAGCAGACAGCTT
LOC_Os11g06740
Os.48459.1.A1_at--1039--3391Chr11:3289377..3289401 (25 bp)
CAGACAGCTTAAGTACATTGCATGT
LOC_Os11g06740
Os.48459.1.A1_at--781--7451Chr11:3289406..3289430 (25 bp)
GTGTCGGTAGTTTGTTCCTTCTGAA
LOC_Os11g06740
Os.48459.1.A1_at--886--6691Chr11:3289419..3289441 (23 bp)
GTTCCTTCTGAAATTGGCTCTGCTC
LOC_Os11g06740
Os.48459.1.A1_at--233--8331NONE
GGCTCTGCTCAAGTGATATATCATC
NONE
Os.48459.1.A1_at--711--231NONE
ATATATCATCCTTTTCCCCGGCATT
NONE
Os.48459.1.A1_at--609--451Chr11:3289476..3289500 (25 bp)
ATCTCTTCTGCCACAAGTGATTCGA
NONE
Target Sequence 
GCCTTGACATGGAAACTACGACCTATAGGCTCGACTTTGTGCAGAAAAGGGTGNCCATGGTCCTGAAGAAGGCCAGCTTG
AAAGGCCAGATTATGATGATAGCATTCTTGGTGGTTCTTTTCATCATTCTTTTCGTTTTGGTGTTCTTGACTTGAGAAAT
TTGGTGTCAGTTAACATTCTTGTTGTGTTCAGAACTATACGAGAGTGCAGAGTTTTGAGTCATTGTGTATTCTTATCGGG
TGCATAGAGCAGACAGCTTAAGTACATTGCATGTAATTGTGTCGGTAGTTTGTTCCTTCTGAAATTGGCTCTGCTCAAGT
GATATATCATCCTTTTCCCCGGCATTTCCATCTCTTCTGCCACAAGTGATTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48459.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis