Browse Element(s) Details


Os.48707.1.S1_at

Description gb:AK102835.1
DB_XREF= gi:32988044
TID=Os.48707.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109K01, full insert sequence.
FL= gb:AK102835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4865011/11subtilase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48707.1.S1_at--1048--6351Chr06:29439447..29439471 (25 bp)
GATCCCCGACGTGGAACACAGTGAA
LOC_Os06g48650
Os.48707.1.S1_at--368--351Chr06:29439481..29439505 (25 bp)
ATAACTGGTTCAACTTGCAGCTCCA
LOC_Os06g48650
Os.48707.1.S1_at--291--471Chr06:29439556..29439580 (25 bp)
ATCTCCCAGCTTAGAGGCACGCAGA
LOC_Os06g48650
Os.48707.1.S1_at--1129--5391Chr06:29439585..29439609 (25 bp)
GAAGCGGACAGTTACAAGCGTGGCC
LOC_Os06g48650
Os.48707.1.S1_at--735--6211Chr06:29439613..29439637 (25 bp)
GAGGCCGAAACCTACACCATCATGA
LOC_Os06g48650
Os.48707.1.S1_at--246--9311Chr06:29439692..29439716 (25 bp)
TCCCCGGCGCATCGAGAGAGATAAC
LOC_Os06g48650
Os.48707.1.S1_at--645--7371Chr06:29439852..29439876 (25 bp)
GTGAGCTAGAGCTATGTCTGCCTCT
LOC_Os06g48650
Os.48707.1.S1_at--662--7171Chr06:29439867..29439891 (25 bp)
GTCTGCCTCTGAAAGCTTCAAGCTG
LOC_Os06g48650
Os.48707.1.S1_at--698--7111Chr06:29439936..29439960 (25 bp)
GTCAGTACGATGCTGTATTTCCATG
LOC_Os06g48650
Os.48707.1.S1_at--1077--10171Chr06:29439965..29439989 (25 bp)
TATACTTGTGCTCCTGGCTGTAAAA
LOC_Os06g48650
Os.48707.1.S1_at--232--7591Chr06:29439997..29440021 (25 bp)
GGGCTTTGAAGCCTCTATGAAATGA
LOC_Os06g48650
Target Sequence 
GATCCCCGACGTGGAACACAGTGAAGTATCAAACATAACTGGTTCAACTTGCAGCTCCAGCTCCAAGGTGCAGCAGCGCC
CCTATGATCTCAACATCCCCTCAATCACCATCTCCCAGCTTAGAGGCACGCAGACGGTGAAGCGGACAGTTACAAGCGTG
GCCGCCGAGGCCGAAACCTACACCATCATGACAAGAATGTCGCCGGAGATCGCGCTGGAGGTCTCACCTCCNGCGCTGAC
AGTGCTCCCCGGCGCATCGAGAGAGATAACGGCGACCCTCACGGCCAGGTCAGTGACTGGCACNTACAGTTTTNGGAGAG
ATNCACCANTGAAANGGGGACCGANGGTCACNTTGTGAGAATCCCAGTGGTAGCTATGGGATTTAAGTAGACTAATGTAA
GTGGCTCCAGGTGAGCTAGAGCTATGTCTGCCTCTGAAAGCTTCAAGCTGAGGAATGCTGTAATTTTTTGTAGCTTAGTA
GAAAGAAAANTAATAGTCAGTACGATGCTGTATTTCCATGNTGNTATACTTGTGCTCCTGGCTGTAAAATATATGTGGGC
TTTGAAGCCTCTATGAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis