Browse Element(s) Details


Os.48931.1.S1_at

Description gb:AK102665.1
DB_XREF= gi:32987874
TID=Os.48931.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101K23, full insert sequence.
FL= gb:AK102665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1175011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11700OsAffx.14643.1.S1_at11/115+6626452..6627639pentatricopeptide, putative, expressed
LOC_Os05g11710Os.1382.1.S1_at11/115+6628868..663112960S ribosomal protein L11, putative, expressed
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48931.1.S1_at--881--4811Chr05:6646688..6646712 (25 bp)
GCTCAGTTTCCAGGTTGGTGCTTGA
LOC_Os05g11750
Os.48931.1.S1_at--532--8611Chr05:6646673..6646697 (25 bp)
TGGTGCTTGACTTTTCTGGAAATTT
LOC_Os05g11750
Os.48931.1.S1_at--998--9071Chr05:6646605..6646629 (25 bp)
TGCTCCATAACTTAATTCTCTTCCT
LOC_Os05g11750
Os.48931.1.S1_at--746--10651Chr05:6646585..6646609 (25 bp)
TTCCTCTGCCAGTGAATTCCTGATT
LOC_Os05g11750
Os.48931.1.S1_at--1045--1071Chr05:6646477..6646501 (25 bp)
AGGGAAGTCCTCTAGTCATGTGCAA
LOC_Os05g11750
Os.48931.1.S1_at--706--9891Chr05:6646422..6646446 (25 bp)
TACTTATGGTTGTGCCCTGTGGGAA
LOC_Os05g11750
Os.48931.1.S1_at--730--1351Chr05:6646392..6646416 (25 bp)
AGAGAGTGTTGTTTCCAGCTGGCAG
LOC_Os05g11750
Os.48931.1.S1_at--96--7011Chr05:6646358..6646382 (25 bp)
GTACTGCTGAATTTTCTTTTGGCTT
LOC_Os05g11750
Os.48931.1.S1_at--469--8051Chr05:6646311..6646335 (25 bp)
GGAGATCCATGTTCGTTGTCTTAAC
LOC_Os05g11750
Os.48931.1.S1_at--265--2011Chr05:6646288..6646312 (25 bp)
ACTCTTGTGCTAATACGTTGGTCTC
LOC_Os05g11750
Os.48931.1.S1_at--1006--8591Chr05:6646270..6646294 (25 bp)
TGGTCTCATCAGCTTGGCCTATAAA
LOC_Os05g11750
Target Sequence 
GCTCAGTTTCCAGGTTGGTGCTTGACTTTTCTGGAAATTTTCATCTACATCTAACAACTACTGCTGAGTTTATGAGATCA
GTATGCTCCATAACTTAATTCTCTTCCTCTGCCAGTGAATTCCTGATTTTGCGAGGTGAATCGTAAGCAGTTAGATTTAG
AAATCAAGCATTAATTTAGTTCGATGGACCAGAAAGCTAGTTTCAGTTTGAAGGGAAGTCCTCTAGTCATGTGCAATTAG
TGATCATGTTAGGTGGTTTGGCTTAGTACTTATGGTTGTGCCCTGTGGGAATGATCAGAGAGTGTTGTTTCCAGCTGGCA
GAATTGCAATGTACTGCTGAATTTTCTTTTGGCTTGTCAATTATGTTAGGTGTCTTTGGAGATCCATGTTCGTTGTCTTA
ACTCTTGTGCTAATACGTTGGTCTCATCAGCTTGGCCTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis