Browse Element(s) Details


Os.48958.1.S1_s_at

Description gb:AK100024.1
DB_XREF= gi:32985233
TID=Os.48958.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146D04, full insert sequence.
FL= gb:AK058282.1 gb:AK100024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g362004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48958.1.S1_s_at--124--6491Chr07:21631260..21631284 (25 bp)
GATACTGTGCCTCAGAGTCGCTTGA
LOC_Os07g36200
Os.48958.1.S1_s_at--815--10731Chr07:21631281..21631305 (25 bp)
TTGACAAGTGTTCCTAGCCCTAAAG
LOC_Os07g36200
Os.48958.1.S1_s_at--69--6451Chr07:21631329..21631353 (25 bp)
GATCAGGTTGGCTTCTCAAGGCTCA
LOC_Os07g36200
Os.48958.1.S1_s_at--533--2911Chr07:21631346..21631370 (25 bp)
AAGGCTCACTGACAACCGGGCATTA
LOC_Os07g36200
Os.48958.1.S1_s_at--402--7891Chr07:21631401..21631425 (25 bp)
GGTTACTAACCTCATTGCACATGCA
NONE
Os.48958.1.S1_s_at--738--1651Chr07:21631473..21631497 (25 bp)
AGCGCACTGGTTTTATCTTCATGTT
NONE
Os.48958.1.S1_s_at--225--10791Chr07:21631529..21631553 (25 bp)
TTGTTGCTCTCTGGATGGCGACACA
NONE
Os.48958.1.S1_s_at--705--8491Chr07:21631579..21631603 (25 bp)
TGGCTCATTTCCACTCTTGATAACA
NONE
Os.48958.1.S1_s_at--149--9751Chr07:21631675..21631699 (25 bp)
TAATTTGCAACCTCTGTGCTGCTAC
NONE
Os.48958.1.S1_s_at--192--7311Chr07:21631690..21631714 (25 bp)
GTGCTGCTACTTGGATGTGCCACAT
NONE
Os.48958.1.S1_s_at--493--8811Chr07:21631741..21631765 (25 bp)
TGTTGCCAGATCAGTGCTATGCCTA
NONE
Target Sequence 
GATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCAGGTTGG
CTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCA
CATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTG
ATTCTTCCATCATGGGAAAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACTG
GTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCG
TGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTA
AGATGTTGCCAGATCAGTGCTATGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48958.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis