Browse Element(s) Details


Os.49076.1.S1_at

Description gb:AK103404.1
DB_XREF= gi:32988613
TID=Os.49076.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128C16, full insert sequence.
FL= gb:AK103404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0311011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA
LOC_Os01g03130OsAffx.23070.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03130Os.55272.1.S1_at11/111+1213817..1214896expressed protein
LOC_Os01g03144Os.45486.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed
LOC_Os01g03144Os.1182.1.S1_x_at11/111+1219903..1227308ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49076.1.S1_at--105--2831Chr01:1195978..1196002 (25 bp)
AAGTTCGTCCGCAACACATTCAGCT
LOC_Os01g03110
Os.49076.1.S1_at--575--8711Chr01:1195818..1195842 (25 bp)
TGTCCGAGCTGCCATCAGGGTCAAG
LOC_Os01g03110
Os.49076.1.S1_at--633--7831Chr01:1195800..1195824 (25 bp)
GGTCAAGGATCACCCCAGTAGACTG
LOC_Os01g03110
Os.49076.1.S1_at--394--1171Chr01:1195784..1195808 (25 bp)
AGTAGACTGCTCTCCATGACGAGCT
LOC_Os01g03110
Os.49076.1.S1_at--482--5911Chr01:1195764..1195788 (25 bp)
GAGCTCAGTCTCTATGGTCATTCAG
LOC_Os01g03110
Os.49076.1.S1_at--13--3291Chr01:1195683..1195707 (25 bp)
CAAAGCCCCATTTTGCAGTGGAGAT
LOC_Os01g03110
Os.49076.1.S1_at--750--9471Chr01:1195656..1195680 (25 bp)
TCTAGGTGGATGAGTGCTTCCTTCC
LOC_Os01g03110
Os.49076.1.S1_at--534--4911Chr01:1195641..1195665 (25 bp)
GCTTCCTTCCGTGGTATACATGGTA
LOC_Os01g03110
Os.49076.1.S1_at--229--5371Chr01:1195544..1195568 (25 bp)
GAAGAGCAATGTTCTGTATCCCCTA
LOC_Os01g03110
Os.49076.1.S1_at--442--8771Chr01:1195530..1195554 (25 bp)
TGTATCCCCTATGATTGTTCAGCTG
LOC_Os01g03110
Os.49076.1.S1_at--660--6751Chr01:1195514..1195538 (25 bp)
GTTCAGCTGGACATGTTTCTTTCTT
LOC_Os01g03110
Target Sequence 
AAGTTCGTCCGCAACACATTCAGCTCCATCGCTTCGCAGTACTGCCCTCCTATATGGCGCGACCTCAGCTTGGTCTCAGC
AGGCCTGGCTCTCATTGCCTCTGGCTTAACACTTGGCCTCCTCTTGATGCTTTTTGCGGACCGCCCCCAAAGGGAGGAGG
TGTCCGAGCTGCCATCAGGGTCAAGGATCACCCCAGTAGACTGCTCTCCATGACGAGCTCAGTCTCTATGGTCATTCAGA
CTAGTATAGCAATTGCCTGTAATAGTTAGGAAAAGAAGAAGGTGAAGCACTGGGGCAAAGCCCCATTTTGCAGTGGAGAT
GATCTAGGTGGATGAGTGCTTCCTTCCGTGGTATACATGGTATGTTTCAGGGAATAGTTGTAAAGGCTAATGCCTAATGG
CAAACAAAATTTGGGCAAAACCCCACTATGATATGAAGAGCAATGTTCTGTATCCCCTATGATTGTTCAGCTGGACATGT
TTCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis