Browse Element(s) Details


Os.49149.1.S1_at

Description gb:AK106080.1
DB_XREF= gi:32991289
TID=Os.49149.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A07, full insert sequence.
FL= gb:AK106080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3446011/11plastid-lipid associated protein PAP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49149.1.S1_at--1157--4831Chr04:20688252..20688276 (25 bp)
GCTACAAATCACTAGTTTCCCTACG
LOC_Os04g34460
Os.49149.1.S1_at--170--3071Chr04:20688258..20688282 (25 bp)
AATCACTAGTTTCCCTACGCTACAT
LOC_Os04g34460
Os.49149.1.S1_at--1024--9931Chr04:20688273..20688297 (25 bp)
TACGCTACATTTTTTCTTTCCAGAA
LOC_Os04g34460
Os.49149.1.S1_at--531--3671Chr04:20688288..20688312 (25 bp)
CTTTCCAGAAGTGGTGTGGATGCTT
LOC_Os04g34460
Os.49149.1.S1_at--858--9051Chr04:20688308..20688332 (25 bp)
TGCTTTTAACACCAATAATTTCGGG
LOC_Os04g34460
Os.49149.1.S1_at--274--10311Chr04:20688326..20688350 (25 bp)
TTTCGGGTAGCACATGTATAGCAGC
LOC_Os04g34460
Os.49149.1.S1_at--390--8771Chr04:20688340..20688364 (25 bp)
TGTATAGCAGCAGAGTAACCCAATT
LOC_Os04g34460
Os.49149.1.S1_at--467--9811Chr04:20688355..20688379 (25 bp)
TAACCCAATTTGCATCCAGATTCCA
LOC_Os04g34460
Os.49149.1.S1_at--413--1251Chr04:20688372..20688396 (25 bp)
AGATTCCAGAGTTCTCCTCAACATT
LOC_Os04g34460
Os.49149.1.S1_at--81--6071Chr04:20688380..20688404 (25 bp)
GAGTTCTCCTCAACATTTTGGTCAG
LOC_Os04g34460
Os.49149.1.S1_at--536--10411Chr04:20688395..20688419 (25 bp)
TTTTGGTCAGATACGTTGATGAATC
LOC_Os04g34460
Target Sequence 
GCTACAAATCACTAGTTTCCCTACGCTACATTTTTTCTTTCCAGAAGTGGTGTGGATGCTTTTAACACCAATAATTTCGG
GTAGCACATGTATAGCAGCAGAGTAACCCAATTTGCATCCAGATTCCAGAGTTCTCCTCAACATTTTGGTCAGATACGTT
GATGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis