Browse Element(s) Details


Os.49189.1.S1_at

Description gb:AK103748.1
DB_XREF= gi:32988957
TID=Os.49189.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033142D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033142D19, full insert sequence.
FL= gb:AK103748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2934010/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29290OsAffx.7246.1.S1_x_at11/1111+16482703..16484521Cytochrome P450 family protein, expressed
LOC_Os11g29300OsAffx.3620.1.S1_at1/1111+16488754..16489495hypothetical protein
LOC_Os11g29309NANA11+16497812..16498119NA
LOC_Os11g29320OsAffx.442.1.S1_x_at4/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.442.1.S1_at2/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.30226.2.S1_x_at1/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330OsAffx.19066.1.S1_at11/1111+16505327..16505782hypothetical protein
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49189.1.S1_at--1083--3111Chr11:16511473..16511497 (25 bp)
AATTTGGGTAGCTCCTCTGGGCTGT
LOC_Os11g29340
Os.49189.1.S1_at--1090--3811NONE
CTGAAGAAGCGGCACCTGGATTTTC
NONE
Os.49189.1.S1_at--523--7991Chr11:16513060..16513084 (25 bp)
GGATGAACTCATCGCTCGCTTAAGA
LOC_Os11g29340
Os.49189.1.S1_at--17--9511Chr11:16513100..16513124 (25 bp)
TCTAGAGAAAGCTCGTGCCGTACTC
LOC_Os11g29340
Os.49189.1.S1_at--585--9171Chr11:16513115..16513139 (25 bp)
TGCCGTACTCTCTTTGTAGGTTGAT
LOC_Os11g29340
Os.49189.1.S1_at--708--7431Chr11:16513145..16513169 (25 bp)
GTGTTTCCTGATTTGCTATGTCAAG
LOC_Os11g29340
Os.49189.1.S1_at--290--3871Chr11:16513204..16513228 (25 bp)
CTGTTGGCTGGATGTTAAGGCTCTA
LOC_Os11g29340
Os.49189.1.S1_at--760--6271Chr11:16513232..16513256 (25 bp)
GATGTAGTCACTTAGGTTGGGCCTT
LOC_Os11g29340
Os.49189.1.S1_at--268--4451Chr11:16513252..16513276 (25 bp)
GCCTTGAGAACTTGTGCCTAATTGC
LOC_Os11g29340
Os.49189.1.S1_at--330--10391Chr11:16513316..16513340 (25 bp)
TTAGGGCTTATCCAGTGCTTTACTT
LOC_Os11g29340
Os.49189.1.S1_at--547--8731Chr11:16513372..16513396 (25 bp)
TGTAACCTTTTGTCTCATACTGGAG
LOC_Os11g29340
Target Sequence 
AATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGCACCTGGATTTTCNGGTCNCNCNCTNCNGACANTCAC
AGTTGAGAGNTTGCGTGCACTTNTGCGANAGAGGGGCCTCATNNCNNAAGGGAAAAAGGATGAACTCATCGCTCGCTTAA
GAGAATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGTGTTTCCTGATTTGCTA
TGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTGTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCAC
TTAGGTTGGGCCTTGAGAACTTGTGCCTAATTGCATTAGCTTGTCAGAAATTTNGGCTTGGGTTCCCTGTTTGTTAGGGC
TTATCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCTCATACTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis