Browse Element(s) Details


Os.49197.1.S1_at

Description gb:AK063355.1
DB_XREF= gi:32973373
TID=Os.49197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C05, full insert sequence.
FL= gb:AK063355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4249011/11DIE2/ALG10 family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49197.1.S1_at--96--5711Chr04:24927393..24927417 (25 bp)
GACTCCAGTTTATGTGTACTCATGG
LOC_Os04g42490
Os.49197.1.S1_at--1140--2211Chr04:24927243..24927267 (25 bp)
ACAAGACTTTGGGTGCTGTCCTTTG
LOC_Os04g42490
Os.49197.1.S1_at--501--8711Chr04:24927227..24927251 (25 bp)
TGTCCTTTGTTCTATCAGTTGCCCT
LOC_Os04g42490
Os.49197.1.S1_at--207--3611Chr04:24927155..24927179 (25 bp)
CATTGGTCATACTGGTTCTTCATTC
LOC_Os04g42490
Os.49197.1.S1_at--651--6731Chr04:24927141..24927165 (25 bp)
GTTCTTCATTCTCCAGTGATCAGCA
LOC_Os04g42490
Os.49197.1.S1_at--1004--10331Chr04:24927089..24927113 (25 bp)
TTTATGCCGCTGTTGACTTCTTCAC
LOC_Os04g42490
Os.49197.1.S1_at--851--10511Chr04:24927069..24927093 (25 bp)
TTCACTCTGGCAATGTTTCTGTTCA
LOC_Os04g42490
Os.49197.1.S1_at--638--6751Chr04:24927049..24927073 (25 bp)
GTTCAGACCTTTCCAGTGGCAACAT
LOC_Os04g42490
Os.49197.1.S1_at--766--11Chr04:24926965..24926989 (25 bp)
ATTCCGGTGTACAAATTCCCTAGAG
LOC_Os04g42490
Os.49197.1.S1_at--129--5691Chr04:24926884..24926908 (25 bp)
GACTTGAGAGCTTTGTCTGTACACT
LOC_Os04g42490
Os.49197.1.S1_at--162--7031Chr04:24926866..24926890 (25 bp)
GTACACTAGGATGTCTTGCGAAGCT
LOC_Os04g42490
Target Sequence 
GACTCCAGTTTATGTGTACTCATGGTTTTCAATTGTTAATATCTTAGGGAAGTCACAGACAAGACTTTGGGTGCTGTCCT
TTGTTCTATCAGTTGCCCTTGCTCTCATCCCTGCCCCATTGGTTGAATTTAGATACTATACAATTCCATTGGTCATACTG
GTTCTTCATTCTCCAGTGATCAGCAATGTTAAATTGCTTGCTTTGGGGTTTCTTTATGCCGCTGTTGACTTCTTCACTCT
GGCAATGTTTCTGTTCAGACCTTTCCAGTGGCAACATGAGCCTGGGACACAAAGGTTTATTTGGTAGTTTAGGATACAGA
ATTAGAGAGGAGGCAAATTCCGGTGTACAAATTCCCTAGAGCATGAACCGCTAGCAGGGTTTATATATATGAGGGTGAAT
CCCTCGGAGAAATTTTAGACTTGAGAGCTTTGTCTGTACACTAGGATGTCTTGCGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis